Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d19r
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   2.1  
SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy...    27   2.1  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    27   3.6  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   4.8  

>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 710 SNVNASYTQIAAIKQNAYESEPRGPLT 630
           SN N +   I AI   AY + P+GPLT
Sbjct: 352 SNPNVALHLIVAIGNEAYMALPKGPLT 378


>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 206

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 18  HIHIVL*HSNYLFGNVIKLSPKIKYVLTYIADKYN 122
           H+HI++   N+   +V KL P I  +L   + KYN
Sbjct: 103 HLHIIVGRGNHSANHVEKLRPAIVRMLEQQSIKYN 137


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 42  SNYLFGNVIKLSPKIKYVLTYIADKYNI 125
           S+YL G +++LSP+  +VL +IA KY +
Sbjct: 351 SSYLDG-LLELSPRKAFVLYHIAAKYGL 377


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  HSNYLFGNVIKLSPKIKYVL 98
           H+NYL GN+I L   I ++L
Sbjct: 118 HTNYLIGNIIGLPLTIPFIL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,545
Number of Sequences: 5004
Number of extensions: 56999
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)