Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d19r
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical
           protein F17A9.2 protein.
          Length = 533

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 710 SNVNASYTQIAAIKQNAYESEPRGPLTKPNALV 612
           SNV+A    + AI    Y + P+GPLT+ + +V
Sbjct: 327 SNVDAEKHLVVAIGNKCYAAMPKGPLTEDHVMV 359


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 207 GVKA*QLSRKRSIFNVLI*IEHIVPSIVYYIYLQCRLKHTLFWVIILL 64
           GVK   L     IF V I  E + P I+Y I+    ++H+ + +I+ L
Sbjct: 30  GVKRPFLGYSIMIFGVFI--EFLYPPIIYLIFKTKLIRHSCYKIIVFL 75


>Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 181 KKIYI*CTNLNRTYCTFNSILY 116
           K+IYI  TNLNRT  +  S+LY
Sbjct: 416 KEIYIRSTNLNRTIISAMSLLY 437


>Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 181 KKIYI*CTNLNRTYCTFNSILY 116
           K+IYI  TNLNRT  +  S+LY
Sbjct: 416 KEIYIRSTNLNRTIISAMSLLY 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,330,269
Number of Sequences: 27780
Number of extensions: 303356
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)