Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d19f
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...   107   9e-25
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    28   0.84 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   3.4  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    26   4.5  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    26   4.5  

>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score =  107 bits (258), Expect = 9e-25
 Identities = 52/106 (49%), Positives = 70/106 (66%)
 Frame = +3

Query: 243 VKVYALLVLYKGINNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTHPASRQSVK 422
           +K+Y++ +L        +L  A DL SFS+FQRSS+ EFM F +KT+ ERT+P  RQ V+
Sbjct: 1   MKLYSVSILRFDPKPVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVE 60

Query: 423 EGEYMLQVYVRADNLAGVLISDHEYPNRVAHTLITKTLDEFTAAVP 560
           +  Y+  VY R+D L GV+ SD EYP RVA+TL+ K LDEF    P
Sbjct: 61  QSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNP 106


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 315 DHKHLSEWMHY*SLCTIQVVHKLSPFLLDNFYRSVSKIQ 199
           D+KHL+ +    +L  ++  ++ SPFLL    + + K +
Sbjct: 121 DYKHLTSYNDVLALAIVEQYYRFSPFLLRALQKLIEKFE 159


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 270 YKGINNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTH 398
           Y G    S+L G+Y +   S    ++   F+ FV    +ERT+
Sbjct: 301 YAGYYGMSLLTGSYAVLFASILAHAAQFGFLLFVENPHIERTY 343


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 171 HL-RRIKRRAIESWRPSDKNYLTKMVKVYA 257
           HL   +KRR  ++W  S K   TK  K YA
Sbjct: 109 HLSEEVKRRFYKNWFKSKKKAFTKYAKKYA 138


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 171 HL-RRIKRRAIESWRPSDKNYLTKMVKVYA 257
           HL   +KRR  ++W  S K   TK  K YA
Sbjct: 109 HLSEEVKRRFYKNWFKSKKKAFTKYAKKYA 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,268
Number of Sequences: 5004
Number of extensions: 38517
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)