Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d19f
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1457 + 37508187-37508421,37509012-37509109,37509791-375099...    74   7e-14
08_02_0127 + 12840738-12840913,12841475-12841635,12842123-128422...    33   0.16 
03_06_0257 - 32697469-32697520,32698183-32698301,32698536-326985...    32   0.28 
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011           31   0.86 
04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309...    27   8.0  

>01_06_1457 +
           37508187-37508421,37509012-37509109,37509791-37509904,
           37510361-37510426,37510659-37510745,37510902-37511012
          Length = 236

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 37/93 (39%), Positives = 54/93 (58%)
 Frame = +3

Query: 288 ASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTHPASRQSVKEGEYMLQVYVRADNL 467
           A +L  A D+  F +FQR + +EF+ FV++T+ +RT P  RQSV+  EY +  + R + L
Sbjct: 32  AVVLANATDVSHFGFFQRGAAREFIVFVARTVAQRTQPGQRQSVQHEEYKVHSHNR-NGL 90

Query: 468 AGVLISDHEYPNRVAHTLITKTLDEFTAAVPSS 566
             V   D  YP R A +L+ K LDE+  A   S
Sbjct: 91  CAVAFMDDHYPVRSAFSLLNKVLDEYQKAFGDS 123


>08_02_0127 +
           12840738-12840913,12841475-12841635,12842123-12842202,
           12842435-12842550,12842570-12842705,12842738-12842872
          Length = 267

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 23/102 (22%), Positives = 47/102 (46%)
 Frame = +3

Query: 240 MVKVYALLVLYKGINNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTHPASRQSV 419
           MVK+  +  +  G+     L    DL+   ++++ +   F     K + +  H ASR S+
Sbjct: 1   MVKLTMIARVTDGLPLVEGLDDGRDLKDADFYKQQAKLLF-----KNLSKGQHEASRMSI 55

Query: 420 KEGEYMLQVYVRADNLAGVLISDHEYPNRVAHTLITKTLDEF 545
           + G Y+++       +  + + DH YP ++A   +    +EF
Sbjct: 56  ETGPYIIE-----GRVCYLTMCDHSYPKKLAFQYLEDLKNEF 92


>03_06_0257 -
           32697469-32697520,32698183-32698301,32698536-32698556,
           32698903-32698979,32699331-32699477,32699561-32699721,
           32700320-32700522
          Length = 259

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = +3

Query: 240 MVKVYALLVLYKGINNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTHPASRQSV 419
           MVK+  +  +  G+  A  L    D +   ++++ +   F     K + +  H ASR S+
Sbjct: 1   MVKLTMVARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLF-----KNLSKGQHEASRMSI 55

Query: 420 KEGEYMLQ----VYVRADNLAGVLISDHEYPNRVAHTLITKTLDEF 545
           + G Y  Q    +Y+    +  + + D  YP ++A   +    +EF
Sbjct: 56  ETGPYFFQYPYVLYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEF 101


>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
          Length = 199

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 375 KTMVERTHPASRQSVKEGEYMLQVYVRADNLAGVLISDHEYPNRVAHTLITKTLDEF 545
           K + +  H ASR S++ G Y+   Y+    +  + + D  YP ++A   +    +EF
Sbjct: 41  KNLSKGQHEASRMSIETGPYLFH-YIIEGRVCYLTMCDCSYPKKLAFQYLEDLKNEF 96


>04_03_0681 +
           18628107-18629346,18630476-18630486,18630836-18630943,
           18631158-18631250
          Length = 483

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 386 YHSFTNKSHKFLH*TSLKITKTPKIISTFQNGCIIN 279
           YH   N   KF   TS    K   I+ T Q  C++N
Sbjct: 430 YHVVANDGDKFAFLTSRNAPKNKLILDTRQIACVLN 465


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,202,700
Number of Sequences: 37544
Number of extensions: 208395
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)