Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d19f
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           29   2.0  
SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17)                   28   4.7  

>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +3

Query: 156 FIQKAHLRRIKRRAIESWRPSDKNYLTKMV-KVYALLVLYKGINNASILKGAYDLRSFSY 332
           F  K H     R  I   RP     +  MV K+Y L  +Y   ++  +LK    L  FSY
Sbjct: 135 FPVKPHNNAALRMEIYGCRPDYYFVVWLMVPKIYELKYIYPESSDYKLLKDEVLLEVFSY 194

Query: 333 FQRSSVQEFMTFVSKTMVERTHPASRQSVKEGE 431
           F  + V    +F+S   ++R  P   +S   GE
Sbjct: 195 FDTNEV----SFLS-ARLQRFSPKPSESKLAGE 222


>SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17)
          Length = 421

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 213 PSDKNYLTKMVKVYALLV-LYKGINNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVE 389
           P  K  + K V+   +L  LY G+N+ S L G   L   +   R S +E +TF+ +    
Sbjct: 2   PLKKKIVKKKVEKQRILKKLYYGVNHPSALGGVEKLYRAAKKHRISPKEVLTFLQQQPGY 61

Query: 390 RTHPASRQ 413
             H  +R+
Sbjct: 62  TLHRKARK 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,241
Number of Sequences: 59808
Number of extensions: 266965
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)