Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d19f
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-8|AAK18869.1|  201|Caenorhabditis elegans Hypothetical pr...   109   1e-24
Z81500-3|CAB04095.1|  228|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AL132952-9|CAB61144.2|   61|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z81500-2|CAB04096.1|  394|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF101318-11|ABA00165.1|   67|Caenorhabditis elegans Hypothetical...    29   2.3  
AL132952-20|CAL90889.1|   79|Caenorhabditis elegans Hypothetical...    29   3.1  
Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>U00031-8|AAK18869.1|  201|Caenorhabditis elegans Hypothetical
           protein B0361.10 protein.
          Length = 201

 Score =  109 bits (262), Expect = 1e-24
 Identities = 51/110 (46%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
 Frame = +3

Query: 243 VKVYALLVLYKGINNASI--LKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTHPASRQS 416
           +K+Y++LV +K ++ + +   K   DL SFS+FQR SVQEFMTF +K +VER+   +R S
Sbjct: 1   MKLYSILVFHKNVDTSDVKLFKSECDLSSFSFFQRGSVQEFMTFTAKLLVERSGLGARSS 60

Query: 417 VKEGEYMLQVYVRADNLAGVLISDHEYPNRVAHTLITKTLDEFTAAVPSS 566
           VKE EY++  YVR D L+ V ++D EY  RVA + + + LD+FT  VP++
Sbjct: 61  VKENEYLVHCYVRNDGLSAVCVTDAEYQQRVAMSFLGRVLDDFTTRVPAT 110


>Z81500-3|CAB04095.1|  228|Caenorhabditis elegans Hypothetical
           protein F11D11.4 protein.
          Length = 228

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 282 NNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTHPASRQSVKEGEYMLQVYVRAD 461
           N  S+  G Y      Y +  +    +T  +   +ERT   S  + K+GEY +Q +V   
Sbjct: 114 NGGSVTVGFYG-NGTKYERTVTPNTSITSWTIPYIERTFQVSSTNGKDGEYYVQYFVSEG 172

Query: 462 NLAGVLISDHEYP 500
           +L G +++    P
Sbjct: 173 SLNGSIVTTTSPP 185


>AL132952-9|CAB61144.2|   61|Caenorhabditis elegans Hypothetical
           protein Y51H4A.10 protein.
          Length = 61

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -3

Query: 529 LVIKVCATLLGYS*SDINTPAKLSARTYTCNIYSPSLTDCLDAGCV 392
           L++ +C   + YS  D N    +    + C +Y P    C+   CV
Sbjct: 5   LLLLICLATMAYSQPDENNNGFIQRNFFPCTVYCPDNQLCVHGQCV 50


>Z81500-2|CAB04096.1|  394|Caenorhabditis elegans Hypothetical
           protein F11D11.3 protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 384 VERTHPASRQSVKEGEYMLQVYVRADNLAGVLISDHEYP 500
           +ERT   S  + K+GEY +Q +V   +L G +++    P
Sbjct: 313 IERTFQVSSTNGKDGEYYVQYFVSEGSLNGSIVTTTSPP 351


>AF101318-11|ABA00165.1|   67|Caenorhabditis elegans Hypothetical
           protein Y73C8C.12 protein.
          Length = 67

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = +3

Query: 249 VYALLVLYKGINNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTHPASRQSVK 422
           VY LL+L    N ASIL  AYD++ F+ FQR+ ++  M  + K +  +     R S++
Sbjct: 5   VYTLLIL----NVASILT-AYDVKDFAKFQRNVIRN-MEKLEKLLGNKRPHCCRYSIQ 56


>AL132952-20|CAL90889.1|   79|Caenorhabditis elegans Hypothetical
           protein Y51H4A.32 protein.
          Length = 79

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -3

Query: 529 LVIKVCATLLGYS*SDINTPAKLSARTYTCNIYSPSLTDCLDAGCV 392
           L++ +C   L +S  D N    +    + C +Y P    C+   CV
Sbjct: 23  LLLLICLATLTFSQPDENNNGFIQRNFFPCTVYCPDNQLCVHGQCV 68


>Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical
           protein ZK218.5 protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/69 (24%), Positives = 25/69 (36%)
 Frame = -3

Query: 550 AVNSSRVLVIKVCATLLGYS*SDINTPAKLSARTYTCNIYSPSLTDCLDAGCVLSTIVLL 371
           AVN + +   K C T+      D   P   +AR   C     + TD ++   V +     
Sbjct: 45  AVNCNNLYADKTCETIYNVPTEDAPVPGAKTARPLKCFTALAAATDPVEPDLVKTAAASC 104

Query: 370 TKVINSCTE 344
            K    C E
Sbjct: 105 PKTCGYCCE 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,290,052
Number of Sequences: 27780
Number of extensions: 206392
Number of successful extensions: 431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)