Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d19f
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   3.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   5.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   5.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   5.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   5.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +3

Query: 210 RPSDKNYLTKMVKVYALL--VLYKGINNASILK--GAYDLRS--FSYFQRSSVQEFMTFV 371
           + +DK++L K  KVY LL  V    + N +      A+++ +   SY   ++V+EF++  
Sbjct: 27  KTADKDFLLKQKKVYNLLYRVAQPALANITWYNEGQAWNIEANIDSYTNAAAVKEFLSIY 86

Query: 372 SKTMVER 392
              M+ R
Sbjct: 87  KHGMLPR 93


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +3

Query: 210 RPSDKNYLTKMVKVYALL--VLYKGINNASILK--GAYDLRS--FSYFQRSSVQEFMTFV 371
           + +DK++L K  KVY LL  V    + N +      A+++ +   SY   ++V+EF++  
Sbjct: 27  KTADKDFLLKQKKVYNLLYRVAQPALANITWYNEGQAWNIEANIDSYTNAAAVKEFLSIY 86

Query: 372 SKTMVER 392
              M+ R
Sbjct: 87  KHGMLPR 93


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 TKTPKIISTFQNGC 288
           +K PKIIS+  N C
Sbjct: 298 SKEPKIISSLSNSC 311


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 329 TKTPKIISTFQNGCIINPFVQYK 261
           +K PKIIS+  N  I N    YK
Sbjct: 76  SKEPKIISSLSNKTIHNNNNNYK 98


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 329 TKTPKIISTFQNGCIINPFVQYK 261
           +K PKIIS+  N  I N    YK
Sbjct: 76  SKEPKIISSLSNKTIHNNNNNYK 98


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 329 TKTPKIISTFQNGCIINPFVQYK 261
           +K PKIIS+  N  I N    YK
Sbjct: 76  SKEPKIISSLSNKTIHNNNNNYK 98


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 329 TKTPKIISTFQNGCIINPFVQYK 261
           +K PKIIS+  N  I N    YK
Sbjct: 76  SKEPKIISSLSNKTIHNNNNNYK 98


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 329 TKTPKIISTFQNGCIINPFVQYK 261
           +K PKIIS+  N  I N    YK
Sbjct: 309 SKEPKIISSLSNKTIHNNNNNYK 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,744
Number of Sequences: 438
Number of extensions: 2457
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)