Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d18r
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 43 5e-05
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 38 0.001
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 34 0.018
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 27 2.0
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 4.7
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 26 6.2
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 26 6.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 6.2
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 26 6.2
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 8.2
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 8.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 8.2
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 42.7 bits (96), Expect = 5e-05
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Frame = -1
Query: 615 EESAAFALIENSKKYE-GSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGHL--YSK 445
E A +I+ + E G++++ TIG LTNIA+A+ P+ + R + + AG
Sbjct: 99 EGHAVDFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGN 158
Query: 444 EDPKPEFNALMDVEAYHVVMQKADPEKVTILPFS-QGRLHCNFSASWRKNVLGAIDTKIM 268
P EFN +D A +V+ P + ++P +LH + R L ++
Sbjct: 159 ITPAAEFNIYVDPHAAQMVLSSGIP--IVMMPLDITHQLHTSAKRIARMEALPNRVGPVV 216
Query: 267 KAQNKHERISLTKNVRWQS---LDPAVISTFLKPDL 169
A + E+ K DP + L+PD+
Sbjct: 217 AAWLRMEKAYEAKKYGTDGGPLHDPNTVMWLLRPDI 252
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 618 AEESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMKYDPKFLDRLSH-LYIGAGHLYSKE 442
A A FA+ Y +++V G LTNIA+ + P D + +++G
Sbjct: 114 ATPDAVFAMYTTISNYPEPVTLVATGPLTNIALLLATYPSVTDNIERFIFMGGSTGIGNI 173
Query: 441 DPKPEFNALMDVEAYHVVMQ 382
+ EFN D EA +V++
Sbjct: 174 TSQAEFNVYADPEAARLVLE 193
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 34.3 bits (75), Expect = 0.018
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Frame = -1
Query: 681 WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMKYDP 502
W + NN+SY + SAA +I+ K +++V G +TN+A+A+ P
Sbjct: 114 WQPEYETANTNNESY---IYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWP 170
Query: 501 KFLDRLSHLYIGAGHLYSK----------EDPKPEFNALMDVEAYHVVMQKADPEKV 361
L I G++ S+ D +FN M+ EA + PE +
Sbjct: 171 DLAKNTKSLVIMGGYVDSQIAQVTGGDFLNDMYSDFNLFMEPEAAQTAITADWPELI 227
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 400 GLYVHQGVEFGFWVFFAIQMSRSYIQMRKAVQKFRVVLHC 519
G+ + V W+FF Q S + ++KA+ F ++ C
Sbjct: 179 GITIAYSVILALWMFFRFQYKHSIVTVQKAIM-FLLIFSC 217
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 663 GLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLS 556
G +N+ TD++P A + AA A ++ + E SLS
Sbjct: 809 GYSENDIGGTDIYPFALQGAALAAAKDFSRREASLS 844
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 4.7
Identities = 25/101 (24%), Positives = 41/101 (40%)
Frame = -1
Query: 459 HLYSKEDPKPEFNALMDVEAYHVVMQKADPEKVTILPFSQGRLHCNFSASWRKNVLGAID 280
HLY+K DP F A + + + P +I S+ RL S +LG +
Sbjct: 145 HLYNKLDPNFRFGARYEEDVTTCLKALNYPFLDSI---SRSRLVAIGSPHVWPAILGMLH 201
Query: 279 TKIMKAQNKHERISLTKNVRWQSLDPAVISTFLKPDLVKEY 157
+ Q + +++ V SLD ++ L LV+ Y
Sbjct: 202 WVVSLIQCTEKAVAMVYTVEQNSLDDHLVDKVLFDYLVRTY 242
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 348 FSQGRLHCNFSASWRKNVLGAIDTKIMKAQNKHERISLTKNVRWQS 211
F +G L F+A W +L + TKI Q K T+ V+ Q+
Sbjct: 816 FPKGELKSYFAADWVAALLNSGKTKISSQQTKDLARWATEQVKRQA 861
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/55 (20%), Positives = 23/55 (41%)
Frame = +1
Query: 349 W*NCHFFWVSLLHHHMIGLYVHQGVEFGFWVFFAIQMSRSYIQMRKAVQKFRVVL 513
W F W +LLHH +G+ F + + ++ V +++++L
Sbjct: 293 WKQTAFPWSNLLHHIKLGMLDESNFNGAFAALYLKSSADEFLDALHVVDEYQLLL 347
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 347 NGKIVTFSGSAFCITT**ASTSIKALNSGFGSSLLYK 457
NG +++ +G + + A +++KAL + +GSS LY+
Sbjct: 95 NGDLMSDNGKLDDLNSRAAYSALKALQNSYGSSHLYR 131
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 350 HFHKEGSIATSVRVGEKMFWVLL 282
HFH+ GS++ V VG K+ ++L
Sbjct: 223 HFHQVGSVSDGVVVGSKIIDLIL 245
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 222 RWQSLDPAVISTFLKPDLVKEYKYAKNDIIMC 127
+WQS A I LK +LVK + +++++C
Sbjct: 78 QWQSFGDANILEPLKNELVKNEESTMSELLLC 109
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 468 GAGHLYSKEDPKPEFNALMDVEAYHVVMQKADPEKVTILP 349
GA S+E N L D++ + + PEK I+P
Sbjct: 108 GASQFPSREPASTAINKLSDLQPMASIWENIVPEKPAIIP 147
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 8.2
Identities = 32/136 (23%), Positives = 53/136 (38%)
Frame = -1
Query: 492 DRLSHLYIGAGHLYSKEDPKPEFNALMDVEAYHVVMQKADPEKVTILPFSQGRLHCNFSA 313
D+ S L G KED F D+ + V +++ P T+ F + N S+
Sbjct: 249 DQTSRLVKGKMIFVGKED----FGEEADI-SNSVFIEQNGPNSDTVSGFKETSSIVNSSS 303
Query: 312 SWRKNVLGAIDTKIMKAQNKHERISLTKNVRWQSLDPAVISTFLKPDLVKEYKYAKNDII 133
+ K + N+ + SLT+ +LD + +P KE + AKN+
Sbjct: 304 TTEKPGVALDSQNDTSIFNEEQTNSLTETFNDLTLDHLPENVESEPVAGKENETAKNESG 363
Query: 132 MCGKNRGINTNEFVPK 85
+ N + FV K
Sbjct: 364 ASDNDHKANVHVFVLK 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,830
Number of Sequences: 5004
Number of extensions: 72622
Number of successful extensions: 207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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