Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d18r
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0131 - 17551438-17551549,17552080-17552215,17552361-175524... 59 3e-09
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 57 1e-08
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 53 3e-07
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 2.8
08_01_0680 - 5958066-5960253,5960707-5961503 29 3.7
09_04_0183 + 15389691-15390197,15391259-15391582 28 6.5
09_02_0234 - 6116931-6117052,6117549-6118369,6118573-6118601,611... 28 6.5
06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781... 28 6.5
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 28 6.5
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571... 28 6.5
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949... 28 8.6
>03_04_0131 -
17551438-17551549,17552080-17552215,17552361-17552468,
17552803-17552899,17553003-17553107,17553207-17553392,
17553679-17553738,17553883-17553990
Length = 303
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = -1
Query: 675 YGLDGLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMKYDPKF 496
+G DGLG+ N P ++SAA L+E + Y G ++VV +G LTN+A+A++ DP F
Sbjct: 68 HGSDGLGNQNFP-PPTGKPLDQSAAAFLVEQANLYPGQVTVVALGPLTNLALAIELDPSF 126
Query: 495 LDRLSHLYI--GAGHLYSKEDPKPEFNALMDVEAYHVV 388
++ + I GA + +P E N D +A +V
Sbjct: 127 PKKIGQIVILGGAYSVNGNVNPAAEANIFGDPDAADIV 164
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 57.2 bits (132), Expect = 1e-08
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Frame = -1
Query: 720 GSAEALVSPFGNV--WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLSVVT 547
GSAE L +V + +G DGLG+ + E+SAA L++ + G +SV+
Sbjct: 93 GSAEPLKGGKPHVADFVHGSDGLGNTSFPDPTTTNKVEQSAAEFLVDKVSESPGEISVLA 152
Query: 546 IGTLTNIAVAMKYDPKFLDRLSHLYIGAGHLYS--KEDPKPEFNALMDVEAYHVV 388
+G LTNIA+AMK D F ++ + + G ++ P E N D EA +V
Sbjct: 153 LGPLTNIALAMKKDSSFASKVKRIVVLGGAFFAAGNATPSAEANIHSDPEAADIV 207
>08_02_1567 -
27916010-27916118,27916256-27916391,27916675-27916771,
27916866-27916970,27917058-27917240,27917764-27917823,
27917909-27918096,27919234-27919294
Length = 312
Score = 52.8 bits (121), Expect = 3e-07
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Frame = -1
Query: 720 GSAEALVSPFGNV--WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLSVVT 547
GSAE L V + +G DGLG N +E+AA ++ ++ G +S++
Sbjct: 97 GSAEPLKGGEPRVADFVHGSDGLG-NLFLPAPTSKKVDENAAEFMVNKVSQFPGEVSILA 155
Query: 546 IGTLTNIAVAMKYDPKFLDRLSHLYIGAGHLYS--KEDPKPEFNALMDVEAYHVVMQK-A 376
+G LTN+A+A+K DP F ++ + + G ++ P E N D EA +V A
Sbjct: 156 LGPLTNVALAIKRDPSFASKVKKIVVLGGAFFAAGNVSPAAEANIYGDPEAADIVFTSGA 215
Query: 375 DPEKVTI 355
D + V I
Sbjct: 216 DVDVVGI 222
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 510 YDPKFLD-RLSHLYIGAGHLYSKEDPKPEFNALMDVE 403
YDP +D R++ LY+ A HL + PK E ++ +E
Sbjct: 146 YDPIKIDSRVTALYVDASHLVGLDGPKLELIKMLRIE 182
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 206 SSDCHLT---FLVKEILSCLF*AFIILVSIAPKTFFLQLALKLQWSL 337
S CH FL+ IL+ LF FI+ +S+ F+L L W L
Sbjct: 942 SFTCHRVSALFLLNHILAILFSKFILCISVLSLLFWLYAYLAEYWKL 988
>09_04_0183 + 15389691-15390197,15391259-15391582
Length = 276
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 426 IRVLGLLCYTNVPLLYTNAKGGPKISGRTSLPRQCSSMFQWLQRK 560
+ ++ L C+T + TN G +SGR + WLQ++
Sbjct: 83 VLIVVLFCFTVFAFVVTNKGAGEAVSGRGYKEYRLGDYSNWLQKR 127
>09_02_0234 -
6116931-6117052,6117549-6118369,6118573-6118601,
6118711-6119020,6119469-6119476,6120104-6120232,
6120341-6120445
Length = 507
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 399 YHVVMQKADPEKVTILPFSQGRLHCNFSASWRKNVLGAIDTKIMKAQN 256
Y KAD KV SQ ++ C+F SW + + ID +K N
Sbjct: 434 YKYTRNKADRIKVKC---SQDKVKCDFFTSWERENIHGIDCCFVKLTN 478
>06_03_0819 -
24977204-24977290,24977372-24977746,24977823-24978199,
24978456-24978770,24978861-24979296,24979386-24979463
Length = 555
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 514 EVRPEIFGPPFAFVYRSGTFV*QRRPKTRIQRLD 413
+ R EIFGP +RS + + RPK IQR D
Sbjct: 211 KARSEIFGPLVLLQFRSWSRLPLGRPKNIIQRTD 244
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 317 LKLQWSLPCENGKIVTF 367
LKL+WS+PC ++TF
Sbjct: 223 LKLRWSIPCGPNSVITF 239
>01_01_0733 -
5715719-5715785,5715908-5715966,5717844-5717884,
5718086-5718134,5718427-5718559,5719303-5719384,
5719990-5720472,5720612-5721024,5721260-5721419,
5721541-5721665,5721756-5721811,5721831-5721889,
5722069-5722180,5722952-5723032
Length = 639
Score = 28.3 bits (60), Expect = 6.5
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Frame = -1
Query: 420 ALMD-VEAYHVVMQKADPEKV--TILPFSQGRLHCNFSASWRKNVLGAIDTKIMKAQNKH 250
AL+D + H + ADP +V + PF +L WR + ++ K +
Sbjct: 9 ALLDLIPQIHALF--ADPLRVGVKVFPFFHDKLRFTPIIWWRIKICLSLFVKFNNFEAVV 66
Query: 249 ERISLTKNVRWQSLDPAVISTFLKPDLVKEYKYAKNDIIMCGKNRGINTNEFVPKDEANV 70
+ + L WQ++ +IS YK+ + + + EFV K A++
Sbjct: 67 DPLELLDLFAWQTVFQQLIS----------YKWLSRNFSVSSNDSKRLLQEFVNKHGADL 116
Query: 69 RVVYSI 52
+V+YS+
Sbjct: 117 KVIYSV 122
>05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,
9490089-9490160,9490514-9490585,9490845-9490916,
9491355-9491426,9491503-9491577,9492008-9492073,
9492144-9492188,9492276-9492340,9492429-9492811,
9492878-9493076,9493150-9493308,9493386-9493504,
9493652-9493862,9493993-9494224,9494307-9494457,
9494550-9494870
Length = 892
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = -1
Query: 306 RKNVLGAIDTKIMKAQNK-HERISLTKNVRWQSLDPAVISTFLKPDLVKEYKYAKNDIIM 130
R L I +M Q H+R ++K V + D V +KP + E+ + + D
Sbjct: 809 RDEALRVIHVALMCTQGSPHQRPPMSKVVAMLTGDVEVAEVIMKPSYITEWLHREGDSSY 868
Query: 129 CGKNRGINTNEFVPKDEANVRVV 61
G T EF E+ + +
Sbjct: 869 FTNYAGSATPEFSGHKESELSFI 891
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,591,696
Number of Sequences: 37544
Number of extensions: 452255
Number of successful extensions: 1038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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