Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d18r
         (720 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089659-1|AAL90397.1|  344|Drosophila melanogaster RH22417p pro...    72   7e-13
AE014298-1941|AAG22352.1|  344|Drosophila melanogaster CG11158-P...    72   7e-13
AE014134-2209|AAF53198.1|  355|Drosophila melanogaster CG5418-PA...    66   5e-11
BT022312-1|AAY54728.1|  185|Drosophila melanogaster IP11340p pro...    43   4e-04
AE014296-2445|AAF49690.1|  744|Drosophila melanogaster CG3349-PA...    30   2.8  
BT014917-1|AAT47768.1| 1870|Drosophila melanogaster RE25258p pro...    29   6.4  
AE013599-675|AAF59067.2| 1711|Drosophila melanogaster CG8639-PA ...    29   6.4  
AE014297-3217|AAF56048.1|  919|Drosophila melanogaster CG4907-PA...    29   8.4  

>AY089659-1|AAL90397.1|  344|Drosophila melanogaster RH22417p
           protein.
          Length = 344

 Score = 72.1 bits (169), Expect = 7e-13
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
 Frame = -1

Query: 678 YYGLDGLGD-NNDSYTDLFPPAE-ESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMK-Y 508
           ++G DGL D  N    D+    + E A  A+   ++   G +  +  G LTN A  +  Y
Sbjct: 93  FHGQDGLNDVGNYPVVDVEQELQPEHAVNAMYRLARANPGQVDFLLCGPLTNFANCINLY 152

Query: 507 DPKFLDRLSHLYIGAGHLYSKED--PKPEFNALMDVEAYHVVMQKADPEKVTILPFSQGR 334
              FL  +  +YI  G+++ K +     EFN +MD EA H+ +++   E   ILP+ +  
Sbjct: 153 GNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERL-LEPAIILPW-EPC 210

Query: 333 LHCNFSAS--WRKNVLGAIDTKIMKAQNKHERISLTKN--VRWQSLDPAVISTFLKPD 172
           +   F  +  WR NVLGA+D   ++   + ER  L     V+W S D  + + +L PD
Sbjct: 211 IDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGFVKWISCDSLLTAAYLFPD 268


>AE014298-1941|AAG22352.1|  344|Drosophila melanogaster CG11158-PA
           protein.
          Length = 344

 Score = 72.1 bits (169), Expect = 7e-13
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
 Frame = -1

Query: 678 YYGLDGLGD-NNDSYTDLFPPAE-ESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMK-Y 508
           ++G DGL D  N    D+    + E A  A+   ++   G +  +  G LTN A  +  Y
Sbjct: 93  FHGQDGLNDVGNYPVVDVEQELQPEHAVNAMYRLARANPGQVDFLLCGPLTNFANCINLY 152

Query: 507 DPKFLDRLSHLYIGAGHLYSKED--PKPEFNALMDVEAYHVVMQKADPEKVTILPFSQGR 334
              FL  +  +YI  G+++ K +     EFN +MD EA H+ +++   E   ILP+ +  
Sbjct: 153 GNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERL-LEPAIILPW-EPC 210

Query: 333 LHCNFSAS--WRKNVLGAIDTKIMKAQNKHERISLTKN--VRWQSLDPAVISTFLKPD 172
           +   F  +  WR NVLGA+D   ++   + ER  L     V+W S D  + + +L PD
Sbjct: 211 IDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGFVKWISCDSLLTAAYLFPD 268


>AE014134-2209|AAF53198.1|  355|Drosophila melanogaster CG5418-PA
           protein.
          Length = 355

 Score = 66.1 bits (154), Expect = 5e-11
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
 Frame = -1

Query: 678 YYGLDGLGDNNDSYTDLFPPAE----ESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMK 511
           ++G DGL D    Y D+    E    E A  A+     +Y   +  +  G LTN A  + 
Sbjct: 97  FHGTDGLNDIG-GYPDVSDLQEQLQQEHAVNAMYRLVCQYPKQVDFLLCGPLTNFASCIN 155

Query: 510 -YDPKFLDRLSHLYIGAGHLYSKEDPKP--EFNALMDVEAYHVVMQKADPEKVTILPFSQ 340
            Y   FLD++  ++I  G++Y + +     EFN +MD EA H  +++     V ILP+  
Sbjct: 156 LYGDDFLDKIGGIFIMGGNIYGRGNIMKCAEFNFMMDPEAAHTTLERLKVPAV-ILPWEP 214

Query: 339 G-RLHCNFSASWRKNVLGAIDTKIMKAQNKHERISLT-KNVR-WQSLDPAVISTFLKP 175
                 N S  WR +VLG++D  +++  ++ ER  L  ++++ W + D A+ + ++ P
Sbjct: 215 SIDDDFNLSLDWRLDVLGSVDHPLVELLSRVERSMLVPRDIKHWINPDAALAAAYIFP 272


>BT022312-1|AAY54728.1|  185|Drosophila melanogaster IP11340p
           protein.
          Length = 185

 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
 Frame = -1

Query: 429 EFNALMDVEAYHVVMQKADPEKVTILPFSQG-RLHCNFSASWRKNVLGAIDTKIMKAQNK 253
           EFN +MD EA H  +++     V ILP+        N S  WR +VLG++D  +++  ++
Sbjct: 16  EFNFMMDPEAAHTTLERLKVPAV-ILPWEPSIDDDFNLSLDWRLDVLGSVDHPLVELLSR 74

Query: 252 HERISLT-KNVR-WQSLDPAVISTFLKP 175
            ER  L  ++++ W + D A+ + ++ P
Sbjct: 75  VERSMLVPRDIKHWINPDAALAAAYIFP 102


>AE014296-2445|AAF49690.1|  744|Drosophila melanogaster CG3349-PA
           protein.
          Length = 744

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 336 RLHCNFSASW-RKNVLGAIDTKIMKAQNKHERISLTKNVRWQSLDPAV 196
           +L+  +   W +KN+L  +++K+ + + K   +SL ++V W  L  +V
Sbjct: 414 KLNSLYGEEWHQKNILKDLESKVSQLEYKINNLSLLEDVNWPKLRKSV 461


>BT014917-1|AAT47768.1| 1870|Drosophila melanogaster RE25258p protein.
          Length = 1870

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 439  VFFAIQMSRSYIQMRKAVQKFRVVLHCHGNVRQCSNGYNGKGSFVFLRIFNKSKCSAFF 615
            VFF   +  +++      +K R  L    + R  S  ++ + SFVFL + +   CSA+F
Sbjct: 1085 VFFVAAIGYTFLSWIIMCRKSRTGLKTKEHTRLASVRFDIRCSFVFLLLLSAVWCSAYF 1143


>AE013599-675|AAF59067.2| 1711|Drosophila melanogaster CG8639-PA
            protein.
          Length = 1711

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 439  VFFAIQMSRSYIQMRKAVQKFRVVLHCHGNVRQCSNGYNGKGSFVFLRIFNKSKCSAFF 615
            VFF   +  +++      +K R  L    + R  S  ++ + SFVFL + +   CSA+F
Sbjct: 926  VFFVAAIGYTFLSWIIMCRKSRTGLKTKEHTRLASVRFDIRCSFVFLLLLSAVWCSAYF 984


>AE014297-3217|AAF56048.1|  919|Drosophila melanogaster CG4907-PA
           protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +2

Query: 98  SFVLIPLFLPHIIISFLAYLYSLTKSGLRNVDITAGSSDCHLTFLVKEILSCLF*AFII 274
           +F+L+ +F+P II+  ++ +Y+L   G +NV      S     FL+ + +S  F  F+I
Sbjct: 803 AFILLKIFIPSIIV--MSSIYALVSFGRKNV-----RSIFICLFLMNDAMSLYFCYFVI 854


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,407,381
Number of Sequences: 53049
Number of extensions: 764729
Number of successful extensions: 1774
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1770
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)