Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d18r
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical pr...    49   3e-06
AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical...    48   9e-06
AC006801-1|AAF60752.2|  501|Caenorhabditis elegans Hypothetical ...    31   0.63 
AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine re...    29   2.5  
Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U88174-4|AAB42275.1|  280|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical
           protein F13H8.3 protein.
          Length = 374

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
 Frame = -1

Query: 720 GSAEALVSPFG--NVW--YYGLDGLGDNNDSYTDLFPPAEESA----AFALIENSKKYEG 565
           G+ ++LV P G   VW   +G DG+G   D      P    SA    A   I N  K   
Sbjct: 86  GAQDSLV-PKGPIQVWEELFGSDGIGGVPDVEPKTLPSDFNSAQVGNAVDAIINLTKSTK 144

Query: 564 SLSVVTIGTLTNIAVAMKYDPKFLDRLSHL------YIGAGHLYSKEDPKPEFNALMDVE 403
            + +V +G LTNIA+A++ DP    R+  +      Y+G G+  ++ +   EFN LMD E
Sbjct: 145 DIILVGLGPLTNIAMAIRKDPDISKRVKQVVIMGGNYLGVGN--TQFNSTAEFNFLMDPE 202

Query: 402 AYHVVM 385
           A H+V+
Sbjct: 203 AAHIVL 208


>AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical
           protein Y43F8C.13 protein.
          Length = 338

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 18/207 (8%)
 Frame = -1

Query: 678 YYGLDGLGDNNDSYTDL----FPPAEESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMK 511
           ++G+DG+GD  + +  +    F    + A+ ALI+  ++   + ++VTIG LTN+A+A++
Sbjct: 86  FFGIDGIGDKPEEFPKVERSDFEGEGKHASLALIDILRENRDA-TLVTIGPLTNVAIALQ 144

Query: 510 YDPKFLDRLSHLYIGAGHLYSKED----PKPEFNALMDVEAYHVVMQKADPEKVTILP-- 349
              +F    S L I  G+ Y+  +       E+N   D EA  +V+++     +TI+P  
Sbjct: 145 LCEEFSTYPSRLVIMGGNYYAVGNVDGGSSAEYNFHGDPEAASIVLRRMKC-PITIVPWE 203

Query: 348 --FSQGRLH---CNFSASWRKNVLGAIDTKIMKAQNKHERISLTKNVRWQS-LDPAVIST 187
             + + + H    +FSA  +    G      +       R+    N R  S  D   ++T
Sbjct: 204 AFYFESKTHDASVDFSAHLK---YGTPLANYLSLATSIGRVKCEANGRQYSYCDEIAVAT 260

Query: 186 FLKPD-LVKEYKYAKNDIIMCG-KNRG 112
            +  D + K+ +Y   D+ + G K RG
Sbjct: 261 AIDEDKIAKKSQYLYVDVELNGTKTRG 287


>AC006801-1|AAF60752.2|  501|Caenorhabditis elegans Hypothetical
           protein Y52D5A.2 protein.
          Length = 501

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +1

Query: 382 LHHHMIGLYVHQGVEFGFWVFFAIQMSRSYIQMRKAV 492
           + +H+I L+V+ GV FG  V   +Q  RSY+ +R+A+
Sbjct: 26  IRNHLINLHVYHGVLFGSEVEKILQWDRSYL-VRRAI 61


>AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 13 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +2

Query: 134 IISFLAYLYSLTKSGLRNVDITAGSSDCHLTFLVKEILSCLF*AFI---ILVSIAPKTFF 304
           I+SF A  Y L K+  R  D+T      +  FL+  ILS L   F+   I  S+ P+   
Sbjct: 17  IVSFSANTYMLVKAERRKNDMTL----FYFRFLLDVILSVLVAVFLICGIFYSLFPEPLP 72

Query: 305 LQLALKLQWSLPCEN 349
           L   L    SLP  N
Sbjct: 73  LLQTLIFYLSLPASN 87


>Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical
           protein C07A4.3 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 594 LIENSKKYEGSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYI 469
           L +NS+K    +SV   GT+ ++ V +KYDP    + S  Y+
Sbjct: 305 LWKNSRKIGVGVSVAKRGTMYHVYVCIKYDPPGNMQTSEAYM 346


>U88174-4|AAB42275.1|  280|Caenorhabditis elegans Hypothetical
           protein M01A10.3 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 370 WVSLLHHHMIGLYVHQGVEFGFWVFFAIQMSRSYI 474
           WV + H  +IG++   G+ F FWV F + ++  Y+
Sbjct: 223 WVPIFHVGLIGIF---GIYFMFWVQFDMFVTLKYL 254


>Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical
           protein F22D6.6 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = -1

Query: 471 IGAGHLYSKEDPKP-EFNALMDVEAYHVVMQKADPEKVTILPFSQGRLHCNFSASWRKNV 295
           I  G +  +++P    F    D  AYH V + A+ E +   P     +H +F   W+K  
Sbjct: 235 IEIGPILERQEPVGISFPEFFDA-AYHQVFEVAERETI---PNEALEIHRSFPTDWKKTS 290

Query: 294 LGAIDTKIMKAQNKHERISLTKNVRWQSLDP 202
           +     K  K +    + SL   +     DP
Sbjct: 291 ISEDQMKEEKEKALFSKNSLIPEMEHSDWDP 321


>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +2

Query: 107 LIPLFLPHIIISFLAYLYSLTKSGLRNVDITAGS---SDCHLTFLVKEI-LSCLF*AFII 274
           LI  F  H+II+ LAY  S+  +GL  + +   +   ++ HLT ++  I +S    AFI+
Sbjct: 353 LIMSFTDHVIIAQLAYTISVILAGLNVIGMVKCAQIVAEKHLTLIMAVISMSSWVSAFIL 412

Query: 275 LVSI 286
            + I
Sbjct: 413 PIVI 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,649
Number of Sequences: 27780
Number of extensions: 406320
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)