Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d18r
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
 Frame = -3

Query: 550 NHWNI----DEHCRG--NEVRPEIFGPP 485
           NH NI    D   RG  N VRP+  GPP
Sbjct: 2   NHSNISELLDNLLRGYDNSVRPDFGGPP 29


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 195 SPLGPVTAISRSWSRRFFRA 254
           +PL PV  IS   S  FF A
Sbjct: 441 TPLDPVVVISNDKSTEFFLA 460


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 651 NNDSYTDLFPPAEESAAFALIENSKKYE 568
           +N +YT L    +    F  + N +KYE
Sbjct: 578 DNQTYTSLQMAMKNPIEFTDLSNERKYE 605


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 407 TSIKALNSGFGSSLLYK-CPAPIYKCERRSK 496
           TSI  L  G+G+ ++Y    A + K ++  K
Sbjct: 478 TSINVLGDGYGAGIVYHLSKAELDKMDKEKK 508


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 672 GLDGLGDNNDSYTDLFP 622
           GL+    NN +YT+L P
Sbjct: 12  GLENWRVNNSNYTELLP 28


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 332 SLPCENGKIVTFSGSAFC 385
           SLPCE G I    G   C
Sbjct: 450 SLPCEPGMIKKQQGDTCC 467


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 332 SLPCENGKIVTFSGSAFC 385
           SLPCE G I    G   C
Sbjct: 540 SLPCEPGMIKKQQGDTCC 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,776
Number of Sequences: 438
Number of extensions: 4887
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)