Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d18f
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    79   6e-16
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    53   4e-08
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    32   0.053
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   3.5  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   6.1  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 78.6 bits (185), Expect = 6e-16
 Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
 Frame = +1

Query: 112 KYIIDNDAGGDDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQ 291
           K IID D G DDA+   +AI S +     EL+ +TT  GN      T N  Q+L LAGR 
Sbjct: 2   KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57

Query: 292 DIPIYRGSAEALV-SPFGNVWYYGLDGLGDNNDSYTDLFPPA----EESAAFALIENSKK 456
           DIP+Y GS + L+ +P      +G  G          L PP+    E  A   +I+  + 
Sbjct: 58  DIPVYAGSNKPLLRAPITATHVHGASGF-----EGAVLPPPSRKENEGHAVDFIIDTLRN 112

Query: 457 YE-GSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAG 570
            E G++++ TIG LTNIA+A+   P+ + R   + + AG
Sbjct: 113 NEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAG 151


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
 Frame = +1

Query: 121 IDNDAGGDDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQDIP 300
           ID D G DD +A+ +A  +       +++ ++T HGNT  E  T N   +++L   QD+ 
Sbjct: 21  IDCDPGHDDVVALTLAACAGHC----KILGVSTVHGNTTLEFTTKNALAVMELLN-QDVD 75

Query: 301 IYRGSAEALVSPFGNVWY-YGLDGLGDNNDSYTDLFPP--AEESAAFALIENSKKYEGSL 471
           ++ G+A+ L+       + +G +GL     S    +P   A   A FA+      Y   +
Sbjct: 76  VHAGAAKPLMRESAFATHIHGTNGLA--GISLLPDYPKKKATPDAVFAMYTTISNYPEPV 133

Query: 472 SVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAG 570
           ++V  G LTNIA+ +   P   D +       G
Sbjct: 134 TLVATGPLTNIALLLATYPSVTDNIERFIFMGG 166


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 32.3 bits (70), Expect = 0.053
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +1

Query: 349 WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMKYDP 528
           W    +    NN+SY       + SAA  +I+  K     +++V  G +TN+A+A+   P
Sbjct: 114 WQPEYETANTNNESY---IYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWP 170

Query: 529 KFLDRLSHLYIGAGHL 576
                   L I  G++
Sbjct: 171 DLAKNTKSLVIMGGYV 186


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 367 GLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLS 474
           G  +N+   TD++P A + AA A  ++  + E SLS
Sbjct: 809 GYSENDIGGTDIYPFALQGAALAAAKDFSRREASLS 844


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
 Frame = +1

Query: 175 SEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQ-DIPIYRG--SAEALVS---P 336
           S  +F    L  +TT   ++ + Q+++NN Q   L  RQ    +  G  S  AL+    P
Sbjct: 308 SPNFFFPTPLNIMTTTQDSSRDVQLSLNNVQSQALNNRQRRNQLLPGVPSTSALLDGRRP 367

Query: 337 FGNVWYYGLDGLGDNNDSYTDLFPPAEESAAFAL 438
              V Y+G+    DN D   +   P EE   F L
Sbjct: 368 ENVVDYHGIASFFDNFDKKINKL-PREEDILFGL 400


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 247 LAPRLCSRGPLSERSVL 197
           LAP LCSR PL    VL
Sbjct: 304 LAPELCSRAPLQTTDVL 320


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 195 SRTDRSDNGPREHRRGASYN**SADTQVSWKTRYTDLPWLCRGFGQS 335
           S+   S+ G        SYN  +++TQ+SW + ++ LP   R    S
Sbjct: 735 SQESGSEIGSSIAGTAGSYNVGTSNTQLSWPSTHSTLPATSRELASS 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,964
Number of Sequences: 5004
Number of extensions: 48787
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)