Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d18f
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0131 - 17551438-17551549,17552080-17552215,17552361-175524... 77 1e-14
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 74 1e-13
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 63 2e-10
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 29 2.0
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 29 2.7
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 28 4.7
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171... 28 6.2
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 27 8.2
>03_04_0131 -
17551438-17551549,17552080-17552215,17552361-17552468,
17552803-17552899,17553003-17553107,17553207-17553392,
17553679-17553738,17553883-17553990
Length = 303
Score = 77.0 bits (181), Expect = 1e-14
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Frame = +1
Query: 151 MAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQDIPIYRGSAEALV 330
MAIF+A+ S + EL+ LTT GN T N +L+ GR DIP+ GS +
Sbjct: 1 MAIFVALRSPEV----ELLGLTTIFGNVYTTLATRNALHLLEAVGRTDIPVAEGSHVTIK 56
Query: 331 SPFG---NVWYYGLDGLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLSVVTIGTLTN 501
+ +G DGLG+ N P ++SAA L+E + Y G ++VV +G LTN
Sbjct: 57 KATKLRIASFVHGSDGLGNQNFP-PPTGKPLDQSAAAFLVEQANLYPGQVTVVALGPLTN 115
Query: 502 IAVAMKYDPKFLDRLSHLYIGAG 570
+A+A++ DP F ++ + I G
Sbjct: 116 LALAIELDPSFPKKIGQIVILGG 138
>08_02_1567 -
27916010-27916118,27916256-27916391,27916675-27916771,
27916866-27916970,27917058-27917240,27917764-27917823,
27917909-27918096,27919234-27919294
Length = 312
Score = 73.7 bits (173), Expect = 1e-13
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Frame = +1
Query: 142 DDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQDIPIYRGSAE 321
DD+M I +A + E+I LTT GNT + T N + + AG ++P+ GSAE
Sbjct: 45 DDSMTILMAFRAPTV----EIIGLTTIFGNTTTKNATQNALLLCERAGHPEVPVAEGSAE 100
Query: 322 ALVSPFGNV--WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLSVVTIGTL 495
L V + +G DGLG N +E+AA ++ ++ G +S++ +G L
Sbjct: 101 PLKGGEPRVADFVHGSDGLG-NLFLPAPTSKKVDENAAEFMVNKVSQFPGEVSILALGPL 159
Query: 496 TNIAVAMKYDPKFLDRLSHLYIGAGHLY 579
TN+A+A+K DP F ++ + + G +
Sbjct: 160 TNVALAIKRDPSFASKVKKIVVLGGAFF 187
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = +1
Query: 280 AGRQDIPIYRGSAEALVSPFGNV--WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENSK 453
AGR ++P+ GSAE L +V + +G DGLG+ + E+SAA L++
Sbjct: 83 AGRPEVPVAEGSAEPLKGGKPHVADFVHGSDGLGNTSFPDPTTTNKVEQSAAEFLVDKVS 142
Query: 454 KYEGSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGHLY 579
+ G +SV+ +G LTNIA+AMK D F ++ + + G +
Sbjct: 143 ESPGEISVLALGPLTNIALAMKKDSSFASKVKRIVVLGGAFF 184
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 118 IIDNDAG-GDDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQD 294
I D D GD I++ + + D ++ G N + + IL + GR D
Sbjct: 513 IFDMDMSPGDFISLIYLLKVPTELIDLKGILVSGNGWANVASIDIVYD---ILHMMGRDD 569
Query: 295 IPIYRGSAEAL 327
IP+ RGS AL
Sbjct: 570 IPVGRGSTSAL 580
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +1
Query: 79 CCCVSATTNRPKY-----IIDNDAGGDDAMAIFIAILSEKYFDG 195
CC V+ T RP Y +D D DD + I + I +FDG
Sbjct: 195 CCDVNITIGRPSYELQLRWLDWDHNYDDLLPIAVRIAERGWFDG 238
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 248 TCSSSVFPWPVVRAISSGPSKYF-SLRIAMNIAMASSPPASLSIIYF 111
T ++S+ PWPV + SSG + S+ + + A+ S+ AS + ++F
Sbjct: 438 TTTTSLPPWPVRKRASSGAFEVLSSMPVGITKAVDSTSDASSASVHF 484
>04_01_0148 +
1710369-1710531,1711821-1712279,1712769-1712915,
1713004-1714170,1714378-1714430
Length = 662
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = -1
Query: 248 TCSSSVFPWPVVRAISSGPSKYFSLRIAMNIAMASSPPASLSIIYFGL 105
+C S P+P + SK F L N + PPA +I L
Sbjct: 68 SCGSMSIPFPFALLSACSGSKRFLLNCTSNKTLIGIPPAQYQVINISL 115
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 227 PWPVVRAISSGPSKYFSLRIAMNIAMASSPPASLSII 117
P PVV + S +K LR+ +AMASS LS I
Sbjct: 868 PVPVVSSPSHAKNKKHGLRLRAGMAMASSELPDLSAI 904
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,479,115
Number of Sequences: 37544
Number of extensions: 344247
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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