Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d18f
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47144| Best HMM Match : IU_nuc_hydro (HMM E-Value=0)               102   2e-22
SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   5e-21
SB_17385| Best HMM Match : IU_nuc_hydro (HMM E-Value=2.1e-07)          31   0.52 
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)               27   8.5  

>SB_47144| Best HMM Match : IU_nuc_hydro (HMM E-Value=0)
          Length = 316

 Score =  102 bits (244), Expect = 2e-22
 Identities = 59/160 (36%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
 Frame = +1

Query: 100 TNRPKYIIDNDAGGDDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKL 279
           + RPK IID D G DDA AIFIA LS+      +++A+T   GN +  +V+ N  ++L +
Sbjct: 8   SQRPKVIIDCDVGIDDAQAIFIA-LSQNV----DVVAITCVAGNVEIGKVSRNCLRVLDV 62

Query: 280 AGRQDIPIYRGSAEALVS-PFGNVWYYGLDGLGDNNDSYT-DLFPPAEESAAFALIENSK 453
            GR DIP+Y+G+ + L+   F    Y+G+DGLGD  D+   DL    +  A  A+++  +
Sbjct: 63  CGRTDIPVYKGATKGLLGHTFDLPGYHGVDGLGDATDAKEPDLTLLQKGHAVSAMLDIVR 122

Query: 454 KYEGSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGH 573
           K  G ++++ +  LTN+A+A + DP+F   L  +Y+  G+
Sbjct: 123 KLPGEVTIIALAPLTNLALACRMDPEFSRNLKAIYMMGGN 162


>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
 Frame = +1

Query: 88  VSATTNRPKYIIDNDAGGDDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQ 267
           +S  + R K IID D G DDA AI IA LS+   D  E++A+TT  GN + EQ T N  +
Sbjct: 79  ISTNSTRAKVIIDCDVGVDDAQAIMIA-LSQ---DSIEILAITTVTGNQNTEQATNNTLK 134

Query: 268 ILKLAGRQDIPIYRGSAEALVSPFGNV-WYYGLDGLGDNND-SYTDLFPPAEESAAFALI 441
           +L   G ++IP+Y+G  E L   F  +  Y+G DGLGD       D  P  ++ A  A+I
Sbjct: 135 VLDYCGERNIPVYKGITEGLTGDFVELSAYHGQDGLGDAQGLREPDRTPLKDKHAVLAMI 194

Query: 442 ENSKKYEG------SLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGH 573
           +  K   G       +S++ +  LTN+A+A + DP FL  +  +++  G+
Sbjct: 195 DLVKANPGEASIWNKISILALAPLTNLAIAGRLDPTFLTNVKAVHMMGGN 244


>SB_17385| Best HMM Match : IU_nuc_hydro (HMM E-Value=2.1e-07)
          Length = 233

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 469 LSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGH 573
           +++V +G LTN+A+A + DP F  RL    I  G+
Sbjct: 21  VTLVALGPLTNLALASRLDPDFSKRLRKTVIMGGN 55


>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 477 CNHWNIDEHCRGNEVRPEIFGPP 545
           CNH  ++ H R NE   + FG P
Sbjct: 79  CNHPRLNIHARSNEYHVQFFGEP 101


>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
          Length = 450

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 296 ISCLPANLSIC*LLIVTCSSSVFPWPVVRAISSGPSKY-FSLRIAMNIAMASSPPAS 129
           I  LP N ++  L+++  S   +P P +  +    SKY  ++R    +AM   P AS
Sbjct: 61  IDKLPVNTALLQLVVLGASVMDYPLPDIPNVRENSSKYQAAMRSIEELAMYLKPVAS 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,868,668
Number of Sequences: 59808
Number of extensions: 394676
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)