Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d18f
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical...    80   1e-15
U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical pr...    75   4e-14
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    30   1.4  
Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    27   7.4  
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    27   9.7  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical
           protein Y43F8C.13 protein.
          Length = 338

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
 Frame = +1

Query: 97  TTNRPKYIIDNDAGGDDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILK 276
           T ++ K +ID+D   DD  AI +A+   K     E++A T  HG    +Q   N ++ ++
Sbjct: 2   TVDKVKLVIDSDGVSDDVRAISLALQHPK----AEILAFTAVHGCVTVDQACANIKRTIR 57

Query: 277 LAGRQDIPIYRGSAEALVS-PFGNVW--YYGLDGLGDNNDSYTDL----FPPAEESAAFA 435
              R +IP+Y+G+A++++S P  +    ++G+DG+GD  + +  +    F    + A+ A
Sbjct: 58  ANDRSNIPVYKGAAKSILSLPKDDTVSDFFGIDGIGDKPEEFPKVERSDFEGEGKHASLA 117

Query: 436 LIENSKKYEGSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGHLY 579
           LI+  ++   + ++VTIG LTN+A+A++   +F    S L I  G+ Y
Sbjct: 118 LIDILRENRDA-TLVTIGPLTNVAIALQLCEEFSTYPSRLVIMGGNYY 164


>U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical
           protein F13H8.3 protein.
          Length = 374

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 8/172 (4%)
 Frame = +1

Query: 82  CCVSATTNRPKYIIDNDAGGDDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINN 261
           C VS  T   K IID D   DD   + IA+ ++      E+IA+TT HG     Q   N 
Sbjct: 16  CSVSRPT--VKLIIDTDGVYDDIRGLTIALTNQNV----EVIAITTVHGGVTANQSAANV 69

Query: 262 QQILKLAGRQDIPIYRGSAEALVSPFG--NVW--YYGLDGLGDNNDSYTDLFPPAEESA- 426
            ++L+  G+ ++P++ G+ ++LV P G   VW   +G DG+G   D      P    SA 
Sbjct: 70  ARLLRAIGKHNVPVFIGAQDSLV-PKGPIQVWEELFGSDGIGGVPDVEPKTLPSDFNSAQ 128

Query: 427 ---AFALIENSKKYEGSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGH 573
              A   I N  K    + +V +G LTNIA+A++ DP    R+  + I  G+
Sbjct: 129 VGNAVDAIINLTKSTKDIILVGLGPLTNIAMAIRKDPDISKRVKQVVIMGGN 180


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
            protein Y71F9AL.17 protein.
          Length = 1232

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 229  NTDEEQVTINNQQILKLAGRQDIPIYRGSAEALVSPFGNVWYYGLDG 369
            NTD  Q+T +      +  RQ +P+YRG         G  +  GL+G
Sbjct: 1161 NTDAHQLTYDEHNPFVVCSRQFVPLYRGRPLCKCPYCGASYSEGLEG 1207


>Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical
           protein C07A4.3 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 436 LIENSKKYEGSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYI 561
           L +NS+K    +SV   GT+ ++ V +KYDP    + S  Y+
Sbjct: 305 LWKNSRKIGVGVSVAKRGTMYHVYVCIKYDPPGNMQTSEAYM 346


>Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical
           protein B0491.4 protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 121 IDNDAGGDDAMAIFIAILSEKYFDGPELIALTTGHGNTDEEQVTINN 261
           + N A G D   +F  +L+++Y     + +L+    N+DE  +TI N
Sbjct: 28  LTNRADGGDEHCLFYYLLNKEYEKSGSVHSLSAYPPNSDEMTITIEN 74


>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 177 TQDRNEYRHGIVTARIVVYNIFRSVRSCANATAD 76
           T+ ++ YRH  VT  ++V  +F +V     ATAD
Sbjct: 304 TKLKDSYRHYFVTGALLVMPLFGTVAQLKLATAD 337


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 480 NHWNIDEHC 506
           +HWN+DEHC
Sbjct: 566 SHWNVDEHC 574


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +1

Query: 244 QVTINNQQILKLAGRQDIPIYRGSAEALVSPFGNV 348
           Q ++++ Q+ +   R+D+ +Y+G AE L + FG++
Sbjct: 565 QNSVSSLQMDRDRLRKDVDLYKGKAEILFTKFGDL 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,759
Number of Sequences: 27780
Number of extensions: 288172
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)