Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d18f
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
 Frame = +3

Query: 480 NHWNI----DEHCRG--NEVRPEIFGPP 545
           NH NI    D   RG  N VRP+  GPP
Sbjct: 2   NHSNISELLDNLLRGYDNSVRPDFGGPP 29


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 379 NNDSYTDLFPPAEESAAFALIENSKKYE 462
           +N +YT L    +    F  + N +KYE
Sbjct: 578 DNQTYTSLQMAMKNPIEFTDLSNERKYE 605


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 58  IVFCLSICCCVSATT 102
           IV   +IC CVSA T
Sbjct: 4   IVIISAICVCVSAMT 18


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 35  VPCTIIFGSSFVYRSAVALAQLRTDRN 115
           VPC  +FG+  V  + V    L+T  N
Sbjct: 196 VPCLTLFGNVLVILAVVRERALQTVTN 222


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 358 GLDGLGDNNDSYTDLFP 408
           GL+    NN +YT+L P
Sbjct: 12  GLENWRVNNSNYTELLP 28


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
          protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 40 MHNYFWIVFCLSICC 84
          M N+  ++ CLSI C
Sbjct: 1  MTNWLLLIVCLSIAC 15


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 94   ATTNRPKYIIDNDAGGDDAMAIFIAILSEKYFDGP 198
            ATT   + + +N+ G  D       I +E+   GP
Sbjct: 945  ATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGP 979



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 229  SRGPLSERSVLDHRNTSHSGS 167
            SRG +  RSV   RN   SGS
Sbjct: 1836 SRGSVGRRSVGSARNIPVSGS 1856


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,435
Number of Sequences: 438
Number of extensions: 3495
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)