Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d17r
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.63
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.9
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 2.5
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 3.3
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 26 4.4
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 4.4
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 4.4
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 26 4.4
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 5.8
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 304 VFVYPYEPTPKESEPFKSVVPDNKPFGYP 218
+ VY + P +SE F +VV DN YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 607 VKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 482
+++FL P +G + +D W++FY E DW N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -1
Query: 517 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYK--LLDQGKIPTDMFNSSDTMPSRLML 344
F+ VNP ++ TR + ++SLPMA Y L + + + P +
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNLVVSRDSFTLTGDDNLFPEGGLR 317
Query: 343 PKGTYDG 323
P T DG
Sbjct: 318 PANTIDG 324
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = -1
Query: 523 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 422
DW + K+ P ++T D FF + P +
Sbjct: 82 DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +2
Query: 302 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 436
+K L G R+ RRH V G+ ++RN S+ + L+D +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 216 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 395
+G + L + + N +++ G+Y N NS N + S SL+G+ S LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 664 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 542
H+ +ID S T ++ K L YDEN +PF +W
Sbjct: 58 HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 265 EPFKSVVPDNKPFGYPFDRPVLP 197
E KS VPD P G+P D P+ P
Sbjct: 19 EGLKSSVPDASPKGHP-DSPIFP 40
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 402 PWSKSL*ISAIGKE-----SSLKNAKSVDERVI*DWPGLTFCTNQSSS*KFIQLSSRLKG 566
PWS++ S G +S+K+A + + I + L N + KF KG
Sbjct: 5 PWSRNFLCSCRGFSVCTPYASIKSASELALKNISELQALQKIQNHTEKLKFFSSKLHNKG 64
Query: 567 KPFSSYLG 590
+PF+ LG
Sbjct: 65 EPFTLQLG 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,684
Number of Sequences: 5004
Number of extensions: 58021
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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