Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d17r
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB046775-1|BAB13381.2| 2414|Homo sapiens KIAA1555 protein protein.     31   5.0  
BC112226-1|AAI12227.2|  637|Homo sapiens R3H domain containing 2...    30   8.8  
BC104995-1|AAI04996.2|  637|Homo sapiens R3H domain containing 2...    30   8.8  
BC041857-1|AAH41857.1|  681|Homo sapiens R3HDM2 protein protein.       30   8.8  
AB023219-1|BAA76846.2|  962|Homo sapiens KIAA1002 protein protein.     30   8.8  

>AB046775-1|BAB13381.2| 2414|Homo sapiens KIAA1555 protein protein.
          Length = 2414

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -1

Query: 319  PFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVL-PQYFKQPNMFFKKVLVY-- 149
            P  LF F +  +  P +S  F S    +     P+  P+L P  F+ P +  +  +++  
Sbjct: 1151 PVSLFSFQHLVQHEPGQSPEFFSTQAMSSLLSSPYSMPLLPPSLFQAPPLPLQPTVLHPG 1210

Query: 148  --HEGELFPYLFNIPHYTP 98
              H  +L P+  NIP   P
Sbjct: 1211 QLHLPQLMPHPANIPFRQP 1229


>BC112226-1|AAI12227.2|  637|Homo sapiens R3H domain containing 2
           protein.
          Length = 637

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -1

Query: 397 IPTDMFN-SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGY 221
           +PT  ++ SS   P++ +LP   Y   P Q+ V  YP    P  ++ ++   P + P  Y
Sbjct: 147 LPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYR---PLSHPVAY 203

Query: 220 -PFDRPVLPQYFKQPNM 173
            P     LPQ  +QP +
Sbjct: 204 SPQRGQQLPQPSQQPGL 220


>BC104995-1|AAI04996.2|  637|Homo sapiens R3H domain containing 2
           protein.
          Length = 637

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -1

Query: 397 IPTDMFN-SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGY 221
           +PT  ++ SS   P++ +LP   Y   P Q+ V  YP    P  ++ ++   P + P  Y
Sbjct: 147 LPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYR---PLSHPVAY 203

Query: 220 -PFDRPVLPQYFKQPNM 173
            P     LPQ  +QP +
Sbjct: 204 SPQRGQQLPQPSQQPGL 220


>BC041857-1|AAH41857.1|  681|Homo sapiens R3HDM2 protein protein.
          Length = 681

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -1

Query: 397 IPTDMFN-SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGY 221
           +PT  ++ SS   P++ +LP   Y   P Q+ V  YP    P  ++ ++   P + P  Y
Sbjct: 191 LPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYR---PLSHPVAY 247

Query: 220 -PFDRPVLPQYFKQPNM 173
            P     LPQ  +QP +
Sbjct: 248 SPQRGQQLPQPSQQPGL 264


>AB023219-1|BAA76846.2|  962|Homo sapiens KIAA1002 protein protein.
          Length = 962

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -1

Query: 397 IPTDMFN-SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGY 221
           +PT  ++ SS   P++ +LP   Y   P Q+ V  YP    P  ++ ++   P + P  Y
Sbjct: 472 LPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYR---PLSHPVAY 528

Query: 220 -PFDRPVLPQYFKQPNM 173
            P     LPQ  +QP +
Sbjct: 529 SPQRGQQLPQPSQQPGL 545


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,053,284
Number of Sequences: 237096
Number of extensions: 1974533
Number of successful extensions: 4002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4002
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)