Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d15r
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0026 + 219663-220843,222201-222447,222574-224535                 32   0.39 
06_01_0008 + 141405-142421                                             30   1.2  
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    28   4.8  
10_08_0797 + 20646091-20646519,20646531-20647460                       27   8.3  

>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +3

Query: 429 PSCAQHQPSPASGPACRDGTTPPRTTQRKHRK*WSSYWNETDEFGGPTC 575
           P  A H    A+GPA   G  PP TT     K  +S  +    FGG  C
Sbjct: 359 PITAVHAAPAAAGPAAAGGLMPPATTVAAFSKPAASLMDSFVPFGGFLC 407


>06_01_0008 + 141405-142421
          Length = 338

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 417 HACRPSCAQHQPS-PASGPACRDGTTPPRTTQRKHRK*WSSYWNETDEFGG 566
           H   P+   H+P+ PAS  A      PPR  +R+ R   S  W     FGG
Sbjct: 252 HHAHPTLGSHRPAAPASASASPSPAPPPRLAERRFR--ISLPWPLRAAFGG 300


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 450 ADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQ 286
           +D + ++AC  +C+   L   C      +P S G+  + N  NC   D   ++ Q
Sbjct: 724 SDQQSQQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFDETVEVHQ 778


>10_08_0797 + 20646091-20646519,20646531-20647460
          Length = 452

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 441 QHQPSPASGPACRDGTTPPRTTQRKHRK 524
           +H  +PA  PA      P +TT R+HRK
Sbjct: 115 EHSAAPAPAPA--PAPAPAKTTARRHRK 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,512,348
Number of Sequences: 37544
Number of extensions: 288469
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)