Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d15r
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    36   0.028
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    36   0.028
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    30   1.1  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    30   1.1  
U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of s...    30   1.4  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    29   2.4  
AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    29   2.4  
AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical ...    28   4.2  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z79758-7|CAD98730.1|  763|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z79758-6|CAD98729.1|  673|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z79758-4|CAB02133.2|  790|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z79758-3|CAB02134.1|  689|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    27   9.8  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -1

Query: 456 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 277
           VK D   +  C + C    + P+CA   GE   +F NEC M   +CE K  ++   QG C
Sbjct: 383 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 437


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -1

Query: 456 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 277
           VK D   +  C + C    + P+CA   GE   +F NEC M   +CE K  ++   QG C
Sbjct: 391 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 445


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = -1

Query: 519 CAFAVLFVAVSCRPDKLDLKQVKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNEC 340
           C FA  F  +  +   L L ++       K C H+CT    DP+C          + N C
Sbjct: 85  CHFAQ-FQCIMKKSMGLSLTKLHMGRCSSKDCNHNCTNTEFDPVC----DTNGSVYRNLC 139

Query: 339 VMNNYNCE 316
           V     CE
Sbjct: 140 VFQMRRCE 147


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 381 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSDGIRLS 250
           G TG K +   NEC+ NN  CEH + +  I    C    G  LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 381 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSDGIRLS 250
           G TG K +   NEC+ NN  CEH + +  I    C    G  LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149


>U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform a
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 456 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 277
           + A A   K C  +    +    C  + G  PK+   +C+MN   C+ KD   + S G+C
Sbjct: 10  IVAVATATKTCEANEELVSCHNTCEPQCGYTPKACTEQCIMN--TCDCKDGFVRNSLGKC 67


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 411 CSHACRPSCAQHQPSPASGPAC 476
           C  AC PSC Q   +PA  P C
Sbjct: 178 CMPACLPSCVQSSCAPACQPMC 199



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 411 CSHACRPSCAQHQPSPASGPAC 476
           C  +C+PSC Q   +PA  P C
Sbjct: 225 CMPSCQPSCVQQACAPACQPMC 246



 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 411 CSHACRPSCAQHQPSPASGPAC 476
           C  AC+ SC Q   +PA  P C
Sbjct: 272 CMPACQSSCVQQACAPACQPKC 293


>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 110 MSLFVVIVFIKKSKMFYVFLTSFKQKC 30
           +S+F+V++FI    +F++F    + KC
Sbjct: 192 LSVFLVVIFIISEILFFIFYVKIQMKC 218


>AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.8 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -1

Query: 573 KLVHRIHQFRSNMKTIIFCAFAVLFVAVSCRPDKL---DLKQVKADAERKK 430
           K +  +H+F  N+K  +     + FV+VS   DK    D+K++  DA++KK
Sbjct: 24  KSIIHLHRFSKNLKNKL----PIYFVSVSKGGDKKKKKDIKKIDKDADKKK 70


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 SFICQYYEYNLSKAMLLVPTINNV 223
           SF C + + N S+ + +VP +NN+
Sbjct: 311 SFFCNFCQQNQSRTITIVPPVNNL 334


>Z79758-7|CAD98730.1|  763|Caenorhabditis elegans Hypothetical
           protein W10D5.3f protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 307 YVAQDQPRPVSWIRWHPSLLNTEETIINHVVYSRY*Q 197
           Y  Q +P   S +R HP +L +     NH+V   Y Q
Sbjct: 93  YEMQKRPATTSQVRSHPYVLPSRSGASNHLVNHHYQQ 129


>Z79758-6|CAD98729.1|  673|Caenorhabditis elegans Hypothetical
           protein W10D5.3e protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 307 YVAQDQPRPVSWIRWHPSLLNTEETIINHVVYSRY*Q 197
           Y  Q +P   S +R HP +L +     NH+V   Y Q
Sbjct: 93  YEMQKRPATTSQVRSHPYVLPSRSGASNHLVNHHYQQ 129


>Z79758-4|CAB02133.2|  790|Caenorhabditis elegans Hypothetical
           protein W10D5.3c protein.
          Length = 790

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 307 YVAQDQPRPVSWIRWHPSLLNTEETIINHVVYSRY*Q 197
           Y  Q +P   S +R HP +L +     NH+V   Y Q
Sbjct: 93  YEMQKRPATTSQVRSHPYVLPSRSGASNHLVNHHYQQ 129


>Z79758-3|CAB02134.1|  689|Caenorhabditis elegans Hypothetical
           protein W10D5.3a protein.
          Length = 689

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 307 YVAQDQPRPVSWIRWHPSLLNTEETIINHVVYSRY*Q 197
           Y  Q +P   S +R HP +L +     NH+V   Y Q
Sbjct: 93  YEMQKRPATTSQVRSHPYVLPSRSGASNHLVNHHYQQ 129


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 486 CRPDKLDLKQVKADAERKK-ACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHK 310
           C   KL    +  D+ ++K +C   C     +P+C     +K ++  N C   N  C HK
Sbjct: 100 CIEFKLFKNHISMDSSQEKCSCTAPCP-TEWNPVC----DKKGQTHANFCTFLNSKCYHK 154

Query: 309 DTLRK 295
           + L +
Sbjct: 155 NQLNE 159


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 165 WHIKLAFYWNFFIATSINDVTFCCYC 88
           W +K  F W FF    +    FCC C
Sbjct: 123 WMLKPWFKWTFFAFGLLTGGFFCCCC 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,084,813
Number of Sequences: 27780
Number of extensions: 271066
Number of successful extensions: 873
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)