Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d15f
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    36   0.030
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    36   0.030
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    30   1.1  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    30   1.1  
U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of s...    30   1.5  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    29   2.6  
AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    29   2.6  
AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical ...    28   4.5  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    28   5.9  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +1

Query: 130 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 309
           VK D   +  C + C    + P+CA   GE   +F NEC M   +CE K  ++   QG C
Sbjct: 383 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 437


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +1

Query: 130 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 309
           VK D   +  C + C    + P+CA   GE   +F NEC M   +CE K  ++   QG C
Sbjct: 391 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 445


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = +1

Query: 67  CAFAVLFVAVSCRPDKLDLKQVKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNEC 246
           C FA  F  +  +   L L ++       K C H+CT    DP+C          + N C
Sbjct: 85  CHFAQ-FQCIMKKSMGLSLTKLHMGRCSSKDCNHNCTNTEFDPVC----DTNGSVYRNLC 139

Query: 247 VMNNYNCE 270
           V     CE
Sbjct: 140 VFQMRRCE 147


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 205 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSDGIRLS 336
           G TG K +   NEC+ NN  CEH + +  I    C    G  LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 205 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSDGIRLS 336
           G TG K +   NEC+ NN  CEH + +  I    C    G  LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149


>U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform a
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 130 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 309
           + A A   K C  +    +    C  + G  PK+   +C+MN   C+ KD   + S G+C
Sbjct: 10  IVAVATATKTCEANEELVSCHNTCEPQCGYTPKACTEQCIMN--TCDCKDGFVRNSLGKC 67


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 175 CSHACRPSCAQHQPSPASGPAC 110
           C  AC PSC Q   +PA  P C
Sbjct: 178 CMPACLPSCVQSSCAPACQPMC 199



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 175 CSHACRPSCAQHQPSPASGPAC 110
           C  +C+PSC Q   +PA  P C
Sbjct: 225 CMPSCQPSCVQQACAPACQPMC 246


>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 476 MSLFVVIVFIKKSKMFYVFLTSFKQKC 556
           +S+F+V++FI    +F++F    + KC
Sbjct: 192 LSVFLVVIFIISEILFFIFYVKIQMKC 218


>AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.8 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +1

Query: 13  KLVHRIHQFRSNMKTIIFCAFAVLFVAVSCRPDKL---DLKQVKADAERKK 156
           K +  +H+F  N+K  +     + FV+VS   DK    D+K++  DA++KK
Sbjct: 24  KSIIHLHRFSKNLKNKL----PIYFVSVSKGGDKKKKKDIKKIDKDADKKK 70


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 434 SFICQYYEYNLSKAMLLVPTINNV 363
           SF C + + N S+ + +VP +NN+
Sbjct: 311 SFFCNFCQQNQSRTITIVPPVNNL 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,476,335
Number of Sequences: 27780
Number of extensions: 278841
Number of successful extensions: 883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)