Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d14r
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.77 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.77 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.77 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.1  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   9.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   9.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 707 ADYTAPIYTPQNRNPLQNADAAVTYWLTSGAP 612
           A +TAPIYT + +  +++ + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 707 ADYTAPIYTPQNRNPLQNADAAVTYWLTSGAP 612
           A +TAPIYT + +  +++ + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 707 ADYTAPIYTPQNRNPLQNADAAVTYWLTSGAP 612
           A +TAPIYT + +  +++ + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
 Frame = -2

Query: 596 LSIATFGRTWKLDADSEIAGVP---------PIHTDGPGEAGPYVKTEGL 474
           LSI + G  W++   SE   +P         P+H  G    GP V   G+
Sbjct: 33  LSIYSGGSDWRVAGRSESVVIPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 677 VGCK*ELCNQLLCCCVSE 730
           +GC+ + CN    CC ++
Sbjct: 433 IGCECKTCNSKTKCCFAQ 450


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 657 ERRRRCHILAHERCSKPKDSIVYR 586
           + R+ C  +AH   SK + SIV R
Sbjct: 90  QNRKFCAEIAHGGSSKKRKSIVER 113


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 517 SVWIGGTPAISLS 555
           SVWIGG+   SLS
Sbjct: 113 SVWIGGSILASLS 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,653
Number of Sequences: 438
Number of extensions: 5266
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)