Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d13f
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 241 3e-64
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_34973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 31 1.1
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 30 1.5
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 30 2.0
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 2.6
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 29 2.6
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 2.6
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 3.4
SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013) 29 3.4
SB_5574| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 4.5
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 29 4.5
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 6.0
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 28 6.0
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 6.0
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 241 bits (591), Expect = 3e-64
Identities = 123/149 (82%), Positives = 134/149 (89%)
Frame = +2
Query: 149 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 328
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64
Query: 329 AIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQ 508
AIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQ
Sbjct: 65 AIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 122
Query: 509 QPRLFVGMILILIFAEVLGLYGLIVAIYL 595
QPRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 123 QPRLFVGMILILIFAEVLGLYGLIVALIL 151
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -2
Query: 632 REWCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRIT*AAEQYHARLHLP 477
R WCV+ R+ I CT RW R V P + + +S RR+ E + L+ P
Sbjct: 931 RGWCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRLASQQESQQSLLNAP 985
>SB_34973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 31.5 bits (68), Expect = 0.64
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +2
Query: 35 LGHICLCKSSFVE*VCADSHHSF--WDL*ILPHLTNKMAENNPIYGPFFGVMGAASAIIF 208
L H+ L KS + C DS HSF W +L + N P+ P A S +
Sbjct: 285 LNHLVLPKSRKKKISCVDSLHSFAQWQNVMLETIYTNQVLNFPLAEP------AVSGLYG 338
Query: 209 SALGAAYGTAKSGTGIAAMSVMRP--ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP 382
S + A T + G A S++ P + + ++ VM GI + L A + ++P
Sbjct: 339 SGVAALGITEQLQKGQEASSIVHPSDHDLYQRLMDAVMEGIHKVESLSSASKKESSKEKP 398
Query: 383 AN 388
N
Sbjct: 399 KN 400
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 419 GAGLAVGFSGLAAGFAIGIVG 481
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 301 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV 408
+ CR+ G C + R P C CPPG QRV
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRV 3015
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 540 IRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 418
++I+P N + PR P + T P P P PT P P
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 466 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 335
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 466 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 335
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 492 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 400
TPA PT+PMA A + P+ PA PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -2
Query: 500 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 330
YHA+ + +C ++P +L Q S C PGGHQ Q R RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 485 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 351
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 489 PASPTMPMAKPAARPENPTAKPAPK 415
PA+P P A PAA P PTA PA +
Sbjct: 52 PAAPVTPTAAPAA-PVTPTAAPAAR 75
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 489 PASPTMPMAKPAARPENPTAKPA 421
PA+P P A PAAR PTA PA
Sbjct: 62 PAAPVTPTAAPAAR-VTPTAAPA 83
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -1
Query: 567 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPL 400
+P T+ K R PT +L + +PT AKP PT +P K PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 301 HSCRHGGYYCHLRSGRGCPDCW 366
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 489 PASPTMPMAKPAARPENPTAKPAPK 415
PA+P P A PAA P PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 489 PASPTMPMAKPAARPENPTAKPA 421
PA+P P A PAAR PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 528 PTNNLGC*AVPRTPASP--TMPMAKPAARPENPTAKPAP 418
P+NN G A P TPA+P M +A P+ T P P
Sbjct: 87 PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125
>SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)
Length = 611
Score = 29.1 bits (62), Expect = 3.4
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +2
Query: 35 LGHICLCKSSFVE*VCADSHHSF--WDL*ILPHLTNKMAENNPIYGPFFGVMGAASAIIF 208
L H+ L +S + C DS HSF W +L + N P+ P A S +
Sbjct: 469 LNHLVLPESREKKISCVDSLHSFAQWQNVMLETIYTNQVLNFPLAEP------AVSGLYG 522
Query: 209 SALGAAYGTAKSGTGIAAMSVMRP--ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP 382
S + A T + G A S++ P + + + VM GI + L A + ++P
Sbjct: 523 SGVAALGITEQLQKGQKASSIVHPLDHDLYQRLRDAVMEGICKVESLSSASKKESSKEKP 582
Query: 383 AN 388
N
Sbjct: 583 KN 584
>SB_5574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = -3
Query: 349 HDQTVDGNNTRHDDRNDRLHDQLRP---HHRHXXXXXXXXXXXXXXXXGAEDDSRRRPHN 179
HD T T D + +HD R + RH D +R PHN
Sbjct: 304 HDTTRTARYTTRLDTDRTIHDTARHGPLYTRHGSIRTAQYTTRLDTDRSIHDTARYGPHN 363
Query: 178 SKEGS 164
+++GS
Sbjct: 364 TRQGS 368
>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 664 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 533
+ ++ +STGD S VC G +F D K + Q E K N
Sbjct: 15 LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +3
Query: 153 IQSTDPSLELWGRRLLSSSAPWELPMEL 236
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 501 VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 403
+P TP P P P RP PT +P P P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -1
Query: 525 TNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRT 352
+NN G A P TPA+ +P+A P+ A P T PAP + P A + ++
Sbjct: 220 SNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPPPPYRTTAKPFPKMSLTP 278
Query: 351 ATTRP*MAIIPAMTTGMIDFMISS 280
+P + P +T ++ ++ S
Sbjct: 279 TPKKPPVPKKPVLTPAQLEGLLKS 302
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 492 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 400
TPA PT+P A A + P+ PA PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 492 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 400
TPA PT+P A A + P+ PA PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 492 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 400
TPA PT+P A A + P+ PA PL
Sbjct: 966 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Frame = -1
Query: 636 ATGVVCVQGVYFVYR*MATISP*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTM--PMA 463
AT V + Y + SP P S P A P PA+P P
Sbjct: 29 ATTVTTTTANFTYYPHFISSSPPPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPP 88
Query: 462 KPAARPENPTAKPAPK 415
P P P A+PAP+
Sbjct: 89 PPLPAPPPPPAQPAPQ 104
>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1404
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 206 FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 373
+S + A G + G+ ++V+ + + +I V+ IIA+ G++VAV++A A+
Sbjct: 786 YSVIVAVVGVIIAVVGVI-IAVVGVIIAVVGVIIAVVGVIIAVVGVIVAVVVATAV 840
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,740,928
Number of Sequences: 59808
Number of extensions: 553150
Number of successful extensions: 2007
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1977
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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