Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d13f
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 217 6e-57
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 217 6e-57
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 217 6e-57
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 217 6e-57
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 202 2e-52
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 202 2e-52
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 86 2e-17
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 86 2e-17
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.14
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.32
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.32
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 32 0.43
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.56
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 31 0.75
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 31 0.75
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 29 2.3
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 29 3.0
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 4.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 4.0
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 4.0
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 4.0
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 4.0
U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical pr... 28 5.3
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 5.3
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 5.3
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 28 5.3
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 6.9
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 6.9
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 6.9
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 6.9
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 6.9
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 28 6.9
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 28 6.9
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 28 6.9
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 28 6.9
Z73978-1|CAA98294.1| 236|Caenorhabditis elegans Hypothetical pr... 27 9.2
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 217 bits (530), Expect = 6e-57
Identities = 108/146 (73%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +2
Query: 161 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 340
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 341 LVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 517
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 518 LFVGMILILIFAEVLGLYGLIVAIYL 595
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 217 bits (530), Expect = 6e-57
Identities = 108/146 (73%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +2
Query: 161 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 340
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 341 LVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 517
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 518 LFVGMILILIFAEVLGLYGLIVAIYL 595
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 217 bits (530), Expect = 6e-57
Identities = 108/146 (73%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +2
Query: 161 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 340
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 341 LVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 517
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 518 LFVGMILILIFAEVLGLYGLIVAIYL 595
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 217 bits (530), Expect = 6e-57
Identities = 108/146 (73%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +2
Query: 161 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 340
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 341 LVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 517
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 518 LFVGMILILIFAEVLGLYGLIVAIYL 595
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 202 bits (492), Expect = 2e-52
Identities = 96/147 (65%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +2
Query: 158 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 337
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 338 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 514
GLVVAV+++G ++ ANY + F GL G GL AG+AIGI GDAGVR +QQP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 515 RLFVGMILILIFAEVLGLYGLIVAIYL 595
R+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 140 RMFVGMILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 202 bits (492), Expect = 2e-52
Identities = 96/147 (65%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +2
Query: 158 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 337
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 338 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 514
GLVVAV+++G ++ ANY + F GL G GL AG+AIGI GDAGVR +QQP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 515 RLFVGMILILIFAEVLGLYGLIVAIYL 595
R+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 140 RMFVGMILILIFAEVLGLYGMIVALIL 166
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Frame = +2
Query: 182 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 361
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 362 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 499
G L E + P L G++ G GL VG S L G A+GIVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 500 TAQQPRLFVGMILILIFAEVLGLYGLIVAI 589
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +2
Query: 413 HLGAGLAVGF----SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 580
H+ AGL +GF S L AG+ I G + + G + PR+ ++ +IF E + ++G+I
Sbjct: 49 HMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGII 108
Query: 581 VA 586
+A
Sbjct: 109 MA 110
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Frame = +2
Query: 182 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 361
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 362 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 499
G L E + P L G++ G GL VG S L G A+GIVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 500 TAQQPRLFVGMILILIFAEVLGLYGLIVAI 589
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +2
Query: 413 HLGAGLAVGF----SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 580
H+ AGL +GF S L AG+ I G + + G + PR+ ++ +IF E + ++G+I
Sbjct: 49 HMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGII 108
Query: 581 VA 586
+A
Sbjct: 109 MA 110
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 295 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 378
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 394 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 296
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 394 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 296
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -3
Query: 595 QVDGDDKSVKTQYFSENKNKNHSDE*PR---LLSSTTHACISHDAYGETGSQTRE 440
++DG++ K + K KNH+D P LL ST+ + ++ D + TR+
Sbjct: 511 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKRSSSSGTTRK 565
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +3
Query: 72 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 230
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 231 ELPSQE 248
++P +E
Sbjct: 343 KMPDRE 348
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 595 QVDGDDKSVKTQYFSENKNKNHSDE*PR---LLSSTTHACISHDAYGE 461
++DG++ K + K KNH+D P LL ST+ + ++ D + E
Sbjct: 557 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKFDE 604
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 595 QVDGDDKSVKTQYFSENKNKNHSDE*PR---LLSSTTHACISHDAYGE 461
++DG++ K + K KNH+D P LL ST+ + ++ D + E
Sbjct: 557 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKFDE 604
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 495 RTPASPTMPMAKPAARPENPTAKPAPK 415
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 495 RTPASPTMPMAKPAARPENPTAKPAPK 415
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -1
Query: 567 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKP 424
RP T A R+R P L PR P T A P +RP T +P
Sbjct: 82 RPATKAPNRMRRPPPRKLA--QTPRPPVVTTQRPAPPQSRPPPVTRRP 127
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -1
Query: 567 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKP 424
RP T A R+R P L PR P T A P +RP T +P
Sbjct: 82 RPATKAPNRMRRPPPRKLA--QTPRPPVVTTQRPAPPQSRPPPVTRRP 127
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 325 YCHLRSGRGCPDCWCPPGASQ 387
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 95 DDYLHTLTPRNYFCTDKYGPSFADSTEWVI 6
+D L L N+ CT+ +G + D WVI
Sbjct: 376 NDVLRNLKTINFNCTESFGTNINDEEAWVI 405
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 501 VPRTPASPTMPMAKPAARPENPTAKPAPK 415
VP P PT P +P RPE P +P P+
Sbjct: 96 VPPPPPPPTQPEPEPEPRPE-PQPEPQPE 123
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 307 CRHGGYYCHLRSGRGCPDCWCPPGASQ 387
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 325 YCHLRSGRGCPDCWCPPGASQ 387
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 325 YCHLRSGRGCPDCWCPPGASQ 387
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical
protein C32E8.5 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 SQTRESYSQTSTQVDE-PFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLR 278
S++R+ ++ T+ D+ P +K V E S+ DS + D R DDR D D R
Sbjct: 24 SRSRDRQTRRDTRRDDSPKIKREVKE--EQFSDNDSPRRRRDDRGGRRDDRRDNRRDDRR 81
Query: 277 PH 272
H
Sbjct: 82 DH 83
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 498 PRTPASPTMPMAKPAARPENPTAKPAPK 415
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 498 PRTPASPTMPMAKPAARPENPTAKPAPK 415
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 275 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 400
RPE ++ +VMA + AIY + +++ L NY LY
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY 76
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +1
Query: 328 CHLRSGR-GCPDCWCPPGASQLPP 396
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 498 PRTPASPTMPMAKPAARPENPTAKPAP 418
P P P P + AA PE+P P P
Sbjct: 187 PAGPPGPAGPAGEDAAAPESPPGPPGP 213
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 307 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 432
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 307 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 432
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 502 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 326
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 325 N 323
N
Sbjct: 630 N 630
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 502 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 326
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 325 N 323
N
Sbjct: 630 N 630
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 502 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 326
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 609 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 668
Query: 325 N 323
N
Sbjct: 669 N 669
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 498 PRTPASPTM--PMAKPAARPENPTAKPAPK 415
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 498 PRTPASPTM--PMAKPAARPENPTAKPAPK 415
PRTP +P + P +P A P A+P P+
Sbjct: 434 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 463
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 498 PRTPASPTM--PMAKPAARPENPTAKPAPK 415
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 498 PRTPASPTM--PMAKPAARPENPTAKPAPK 415
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>Z73978-1|CAA98294.1| 236|Caenorhabditis elegans Hypothetical
protein ZC302.3 protein.
Length = 236
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -3
Query: 574 SVKTQYFSENKNKNHSDE*PRLLSSTTHACISHDAYG--ETGSQTRESYSQTSTQVDEPF 401
S++T+Y + N+N S +L+ A + +AY + R+ + + ++D F
Sbjct: 154 SLQTEYLNYKANRNDSRSPSQLVKKIKDATMKAEAYEFFMDDKRVRKVIGELN-EIDSKF 212
Query: 400 VKGVVGWLLE 371
+ + WLL+
Sbjct: 213 KENIGAWLLQ 222
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -1
Query: 498 PRTPASPTMPMAKPAARPEN--PTAKPAPKWMNP 403
P PA P+MP + A+PE P P P P
Sbjct: 562 PSEPAKPSMPSGESPAQPEPSIPAVNPEPSPSQP 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,035
Number of Sequences: 27780
Number of extensions: 396798
Number of successful extensions: 1561
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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