Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d11r
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 32 0.37
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 32 0.37
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 32 0.37
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.64
Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 7.9
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 7.9
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 7.9
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 7.9
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ KH AD + + D++L + K +++ LKK A L K KD K K
Sbjct: 7275 KEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE----KDDKLK 7330
Query: 534 KDVALAKVPNAEDKLKVE 481
++ +DKLK E
Sbjct: 7331 QEADAKLKKEKDDKLKHE 7348
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L + K +++ LK+ A L K KD FK
Sbjct: 7987 KEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE----KDDNFK 8042
Query: 534 KDVALAKVPNAEDKLKVEK 478
++ +DKLK EK
Sbjct: 8043 QEANAKLQKEKDDKLKQEK 8061
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L + K +++ LK+ A L K KD K K
Sbjct: 7435 KEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE----KDDKLK 7490
Query: 534 KDVALAKVPNAEDKLKVE 481
+D +DKLK E
Sbjct: 7491 QDADAKLQKEKDDKLKQE 7508
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L K +++ LK A L K KD FK
Sbjct: 7531 KEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE----KDDNFK 7586
Query: 534 KDVALAKVPNAEDKLKVEK 478
++ +DKLK EK
Sbjct: 7587 QEANAKLQKEKDDKLKQEK 7605
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ----LMTKD 547
++K++ K AD + + D++L + K +++ LK+ A L K + D
Sbjct: 8219 KEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEAD 8278
Query: 546 GKFKKDVALAKVPNAEDKLKVEK 478
GK KK+ A+ KLK EK
Sbjct: 8279 GKLKKEKDNKLKQEADGKLKKEK 8301
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 711 QKEN--LKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKF 538
QKEN K AD + + D++L + K +++ LK+ A L K KD K
Sbjct: 7194 QKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE----KDDKL 7249
Query: 537 KKDVALAKVPNAEDKLKVE 481
K+D +DKLK E
Sbjct: 7250 KQDADAKLQKEKDDKLKQE 7268
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ----LMTKD 547
++K++ K AD + + D++L ++ K +++ K+ A L K + KD
Sbjct: 7547 KEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDKLKQEKD 7606
Query: 546 GKFKKDVALAKVPNAEDKLKVEK 478
FK++ +DKLK EK
Sbjct: 7607 DNFKQEANAKLQKEKDDKLKQEK 7629
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ KH AD + + D++L + K +++ LKK A L K KD K K
Sbjct: 7295 KEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE----KDDKLK 7350
Query: 534 KDVALAKVPNAEDKLKVE 481
++ +DKLK E
Sbjct: 7351 QEADAKLKKEKDDKLKHE 7368
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L + K +++ LK+ A L K KD FK
Sbjct: 8007 KEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE----KDDNFK 8062
Query: 534 KDVALAKVPNAEDKLKVEK 478
++ +DKLK EK
Sbjct: 8063 QEANAKLQKEKDDKLKQEK 8081
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L + K +++ LK+ A L K KD K K
Sbjct: 7455 KEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE----KDDKLK 7510
Query: 534 KDVALAKVPNAEDKLKVE 481
+D +DKLK E
Sbjct: 7511 QDADAKLQKEKDDKLKQE 7528
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L K +++ LK A L K KD FK
Sbjct: 7551 KEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE----KDDNFK 7606
Query: 534 KDVALAKVPNAEDKLKVEK 478
++ +DKLK EK
Sbjct: 7607 QEANAKLQKEKDDKLKQEK 7625
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ----LMTKD 547
++K++ K AD + + D++L + K +++ LK+ A L K + D
Sbjct: 8239 KEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEAD 8298
Query: 546 GKFKKDVALAKVPNAEDKLKVEK 478
GK KK+ A+ KLK EK
Sbjct: 8299 GKLKKEKDNKLKQEADGKLKKEK 8321
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 711 QKEN--LKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKF 538
QKEN K AD + + D++L + K +++ LK+ A L K KD K
Sbjct: 7214 QKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE----KDDKL 7269
Query: 537 KKDVALAKVPNAEDKLKVE 481
K+D +DKLK E
Sbjct: 7270 KQDADAKLQKEKDDKLKQE 7288
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ----LMTKD 547
++K++ K AD + + D++L ++ K +++ K+ A L K + KD
Sbjct: 7567 KEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDKLKQEKD 7626
Query: 546 GKFKKDVALAKVPNAEDKLKVEK 478
FK++ +DKLK EK
Sbjct: 7627 DNFKQEANAKLQKEKDDKLKQEK 7649
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ KH AD + + D++L + K +++ LKK A L K KD K K
Sbjct: 7295 KEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE----KDDKLK 7350
Query: 534 KDVALAKVPNAEDKLKVE 481
++ +DKLK E
Sbjct: 7351 QEADAKLKKEKDDKLKHE 7368
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L + K +++ LK+ A L K KD FK
Sbjct: 8007 KEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE----KDDNFK 8062
Query: 534 KDVALAKVPNAEDKLKVEK 478
++ +DKLK EK
Sbjct: 8063 QEANAKLQKEKDDKLKQEK 8081
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L + K +++ LK+ A L K KD K K
Sbjct: 7455 KEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE----KDDKLK 7510
Query: 534 KDVALAKVPNAEDKLKVE 481
+D +DKLK E
Sbjct: 7511 QDADAKLQKEKDDKLKQE 7528
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFK 535
++K++ K AD + + D++L K +++ LK A L K KD FK
Sbjct: 7551 KEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE----KDDNFK 7606
Query: 534 KDVALAKVPNAEDKLKVEK 478
++ +DKLK EK
Sbjct: 7607 QEANAKLQKEKDDKLKQEK 7625
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ----LMTKD 547
++K++ K AD + + D++L + K +++ LK+ A L K + D
Sbjct: 8239 KEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEAD 8298
Query: 546 GKFKKDVALAKVPNAEDKLKVEK 478
GK KK+ A+ KLK EK
Sbjct: 8299 GKLKKEKDNKLKQEADGKLKKEK 8321
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 711 QKEN--LKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKF 538
QKEN K AD + + D++L + K +++ LK+ A L K KD K
Sbjct: 7214 QKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE----KDDKL 7269
Query: 537 KKDVALAKVPNAEDKLKVE 481
K+D +DKLK E
Sbjct: 7270 KQDADAKLQKEKDDKLKQE 7288
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -2
Query: 714 EQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ----LMTKD 547
++K++ K AD + + D++L ++ K +++ K+ A L K + KD
Sbjct: 7567 KEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDKLKQEKD 7626
Query: 546 GKFKKDVALAKVPNAEDKLKVEK 478
FK++ +DKLK EK
Sbjct: 7627 DNFKQEANAKLQKEKDDKLKQEK 7649
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 315 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 428
RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical
protein T06D8.8 protein.
Length = 387
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = -2
Query: 639 KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 475
+L +++ PL+ +C+ I + TKD K K L+K+ N +DK+ V +L
Sbjct: 61 RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119
Query: 474 -IDACLANK 451
I+A L NK
Sbjct: 120 EIEARLENK 128
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 618 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 478
K NE + A C+ K+QLM++ + KK + K + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 618 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 478
K NE + A C+ K+QLM++ + KK + K + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 466 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 344
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 466 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 344
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 681 DCLSETKADEQLVNKLKTGDFKTENEPLK 595
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 681 DCLSETKADEQLVNKLKTGDFKTENEPLK 595
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 466 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 344
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,017,395
Number of Sequences: 27780
Number of extensions: 336555
Number of successful extensions: 1048
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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