Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d10r
         (542 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   4.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   5.3  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 86  GLTXGNRPLAPETSASPLQLSGDLLCCPRTAPTRGDSKS 202
           G+   + P AP+++A+P+  SG  +  P  AP    + S
Sbjct: 5   GIYEESPPPAPQSAATPISSSG--MTSPAAAPPPATTSS 41


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 52  PLKDTLYLHVVR 87
           PLK T YL+VVR
Sbjct: 320 PLKSTFYLNVVR 331


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 166 STDRANQGRLKIGIDQFTGYKIHALFSLEG 255
           +TD  N G  K+   + T   + ALFSL G
Sbjct: 72  ATDITNGGLQKVAALKKTNPALKALFSLGG 101


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 260 ISPSSENSA*ILYPVNWSMPILSRP 186
           +SPSS ++  I  P++ S+P L  P
Sbjct: 55  LSPSSAHTVLIPQPLHPSVPRLGHP 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,973
Number of Sequences: 336
Number of extensions: 2128
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)