Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d10r
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    67   1e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    57   2e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    50   3e-07
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    36   0.004
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    25   9.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 33/67 (49%), Positives = 43/67 (64%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APSS ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 311 DRMQKEIQALAPSSMKVK---IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367

Query: 306 GHLERKC 286
           G + RKC
Sbjct: 368 GIVYRKC 374


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = -3

Query: 483 RVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGKG 304
           R+  +L+   P S RLK H           +W+GGSIL+S+G+F Q+WIS QEY+E G  
Sbjct: 365 RLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSD 423

Query: 303 HL---ERKC 286
            L   E++C
Sbjct: 424 RLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           ER+  ++   A  S R+  H            W GGSILAS+ +FQ +W+S QEYDE G 
Sbjct: 361 ERLQAEVQRLATGS-RINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVGV 419

Query: 306 GH---LERKC 286
                +E++C
Sbjct: 420 DRALFVEKRC 429


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 13/23 (56%), Positives = 21/23 (91%)
 Frame = -3

Query: 390 WIGGSILASIGSFQQMWISSQEY 322
           W+GGSILAS+ +F+++ I+S+EY
Sbjct: 345 WLGGSILASLSTFRRLLITSEEY 367


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 390 WIGGSILASIGSFQQMWISSQEYDEGG 310
           W GGS+LA    F     +  +Y+E G
Sbjct: 387 WFGGSLLAQTPEFGSYCHTKADYEEYG 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,167
Number of Sequences: 5004
Number of extensions: 34728
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)