Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d10r
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 65 3e-11
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 65 3e-11
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 65 4e-11
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 64 5e-11
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 64 9e-11
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 63 1e-10
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 63 2e-10
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 63 2e-10
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 50 2e-06
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 45 3e-05
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 34 0.084
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 33 0.11
12_02_1282 + 27528159-27529148,27529549-27529614 31 0.79
03_05_0289 - 22778073-22778587,22780393-22780576 30 1.4
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426... 30 1.4
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980... 30 1.4
01_05_0157 + 18699566-18699853,18699956-18700061,18700268-187007... 29 1.8
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 28 4.2
09_03_0197 + 13417143-13417335,13417686-13417729,13417965-134181... 28 5.5
08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160... 28 5.5
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 5.5
11_06_0292 - 22015603-22015716,22015774-22016163 27 7.3
11_06_0175 + 20926022-20926145,20926285-20926640,20926930-209276... 27 7.3
04_04_0973 + 29825057-29825344,29825447-29825552,29825750-298258... 27 7.3
07_03_1139 + 24254662-24255306 27 9.7
05_04_0265 - 19547363-19547401,19547688-19547857,19548451-195486... 27 9.7
04_01_0163 + 1853448-1853668,1853963-1854161 27 9.7
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
+R+++++ A APSS ++K WIGGSILAS+ +FQQMWIS EYDE G
Sbjct: 313 DRMSKEITALAPSSMKIK---VVAPPERKYSVWIGGSILASLSTFQQMWISKDEYDESGP 369
Query: 306 GHLERKC 286
+ RKC
Sbjct: 370 AIVHRKC 376
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
+R+++++ A APSS ++K WIGGSILAS+ +FQQMWIS EYDE G
Sbjct: 313 DRMSKEITALAPSSMKIK---VVAPPERKYSVWIGGSILASLSTFQQMWISKDEYDESGP 369
Query: 306 GHLERKC 286
+ RKC
Sbjct: 370 AIVHRKC 376
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 64.9 bits (151), Expect = 4e-11
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
+R+++++ A APSS ++K WIGGSILAS+ +FQQMWIS EYDE G
Sbjct: 316 DRMSKEITALAPSSMKIK---VVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGP 372
Query: 306 GHLERKC 286
+ RKC
Sbjct: 373 AIVHRKC 379
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 64.5 bits (150), Expect = 5e-11
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
+R+++++ A APSS ++K WIGGSILAS+ +FQQMWIS EYDE G
Sbjct: 310 DRMSKEITALAPSSMKIK---VVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 366
Query: 306 GHLERKC 286
+ RKC
Sbjct: 367 SIVHRKC 373
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 63.7 bits (148), Expect = 9e-11
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
+R+++++ A APSS ++K WIGGSILAS+ +FQQMWI+ EYDE G
Sbjct: 313 DRMSKEITALAPSSMKIK---VVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
Query: 306 GHLERKC 286
+ RKC
Sbjct: 370 SIVHRKC 376
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
+R+++++ A AP S ++K WIGGSILAS+ +FQQMWIS EYDE G
Sbjct: 312 DRMSKEITALAPGSMKIK---VVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGP 368
Query: 306 GHLERKC 286
G + KC
Sbjct: 369 GIVHMKC 375
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
+R+++++ A APSS ++K WIGGSILAS+ +FQQMWIS EY+E G
Sbjct: 313 DRMSKEITALAPSSMKIK---VVAPPERKYSVWIGGSILASLSTFQQMWISRAEYEESGP 369
Query: 306 GHLERKC 286
+ RKC
Sbjct: 370 AIVHRKC 376
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
+R+++++ + APSS ++K WIGGSILAS+ +FQQMWIS EYDE G
Sbjct: 312 DRMSKEITSLAPSSMKVK---VIAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 368
Query: 306 GHLERKC 286
G + KC
Sbjct: 369 GIVHMKC 375
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQ------------- 346
+R+++++ A APSS ++K WIGGSILAS+ +FQQ
Sbjct: 313 DRMSKEITALAPSSMKIK---VVAPPERKYSVWIGGSILASLSTFQQVNLTPTLYEVARM 369
Query: 345 -MWISSQEYDEGGKGHLERKC 286
MWIS EYDE G + RKC
Sbjct: 370 QMWISKGEYDESGPAIVHRKC 390
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQE 325
ER+ +++ + + R+K WIGGSILAS+GSFQQMW S +
Sbjct: 416 ERLEKEVLEESSGNTRVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAD 469
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 33.9 bits (74), Expect = 0.084
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 390 WIGGSILASIGSFQQMWISSQEYDEGGKGHLERKC 286
W+GG+ILA + Q ++ +YDE G + +KC
Sbjct: 363 WLGGAILAKVVFPQNQHVTKGDYDETGPSIVHKKC 397
>01_01_1170 -
9318332-9318461,9318551-9318613,9318694-9318744,
9318837-9318921,9319005-9319068,9319139-9319340,
9319808-9320502
Length = 429
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -3
Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
ER+ ++L P +++K AW GGS+LA F+ M I+ EY+E G
Sbjct: 364 ERLEKELRPLVPDDYQVK---IIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGS 420
Query: 306 GHLERK 289
R+
Sbjct: 421 MRCRRR 426
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 348 QMWISSQEYDEGGKGHLERKC 286
+MWI+ EYDE G + RKC
Sbjct: 330 KMWIAKAEYDESGPSIVHRKC 350
>03_05_0289 - 22778073-22778587,22780393-22780576
Length = 232
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -2
Query: 256 ALLVRTVHEFCIR*IGQCRF*VAPGWRGPWTTQQVAAQLERRGRSLGCKGAVPXSQT 86
AL ++E C R I + W G W Q AA RG SL AVP + T
Sbjct: 62 ALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRGDSLRALSAVPAAFT 118
>03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,
4262554-4262718,4262811-4263178,4263225-4263861,
4263952-4265844,4266325-4266672
Length = 1482
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 KTHYIYTLSGLTXGNRP-LAPETSASPLQLSGDLLCCPRTAPTRGDSKSALTNLPDTK 229
K I LS + G LAP+TS +P ++G L R GDS + D K
Sbjct: 1175 KIFLILVLSSFSVGQLAGLAPDTSGAPAAIAGILTILKRRPAITGDSTKRRITIKDGK 1232
>02_04_0473 +
23197294-23197340,23197443-23197680,23197792-23198016,
23198616-23198762,23198827-23198961,23199415-23199507,
23199925-23200044,23200303-23200413,23200486-23200611,
23200731-23200829,23201024-23201104
Length = 473
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 390 WIGGSILASIGSFQQMWISSQEYDEGG 310
W GGS+LAS F + + EY+E G
Sbjct: 433 WFGGSVLASTAEFYEACHTKAEYEEYG 459
>01_05_0157 +
18699566-18699853,18699956-18700061,18700268-18700712,
18700852-18700880,18701014-18701207,18701497-18702211,
18702552-18702571
Length = 598
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 197 LSRPWLARSVDNTAGRRSVGEARPKSRVQGGGSXKSNR 84
+SR RS+D+ A RRS+ A P+ + S R
Sbjct: 417 VSREMPRRSIDSAAARRSIDSATPRQSIDSTASSSKKR 454
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 155 GRRSVGEARPKSRVQGGGSXKSNRTT 78
GR +GE S V GGG+ KS++ T
Sbjct: 188 GRNGLGEGELVSSVDGGGAEKSSKVT 213
>09_03_0197 +
13417143-13417335,13417686-13417729,13417965-13418107,
13418369-13418481,13418774-13419015
Length = 244
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 83 SGLTXGNRPLAPETSASPLQLSGDLLCC 166
+GL R A +TSASP + D CC
Sbjct: 26 AGLIQAARTTASQTSASPAPAAADYCCC 53
>08_01_0194 -
1603702-1603782,1603970-1604062,1604203-1604328,
1604403-1604513,1604989-1605108,1605665-1605757,
1606024-1606157,1606503-1606530,1606821-1607075,
1607167-1607401,1608147-1608193
Length = 440
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 390 WIGGSILASIGSFQQMWISSQEYDEGG 310
W GGS+ AS F + + +EY+E G
Sbjct: 400 WFGGSVAASNPEFYESCHTKEEYEEHG 426
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 197 LSRPWLARSVDNTAGRRSVGEARPKSRVQGGGSXKSNRTTCRYS 66
+SR RSVD++A RRS+ A P+ + +S +T S
Sbjct: 209 VSRETPRRSVDSSAPRRSIDSAAPRRIIDSAAPRRSIDSTASSS 252
>11_06_0292 - 22015603-22015716,22015774-22016163
Length = 167
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 230 ILYPVNWSMPILSRPWLARSVDNTAGRRSVGEARPKSRVQGGG 102
+ + + W L PWL +S+ A R V P GGG
Sbjct: 16 LCFKLPWPCGDLELPWLFKSISTLAQGRLVAGDLPSPSSDGGG 58
>11_06_0175 +
20926022-20926145,20926285-20926640,20926930-20927671,
20928012-20928031
Length = 413
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 176 RSVDNTAGRRSVGEARPKSRVQGGGSXKSNR 84
RS+D+ A RRS+ A P+ + S R
Sbjct: 239 RSIDSAAARRSIDSATPRRSIDSTASSSKKR 269
>04_04_0973 +
29825057-29825344,29825447-29825552,29825750-29825845,
29826335-29826690,29826980-29827721,29828064-29828083
Length = 535
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 176 RSVDNTAGRRSVGEARPKSRVQGGGSXKSNR 84
RS+D+ A RRS+ A P+ + S R
Sbjct: 361 RSIDSAAARRSIDSATPRRSIDSTASSSKKR 391
>07_03_1139 + 24254662-24255306
Length = 214
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 116 PETSASPLQLSGDLLCCPRTAPT--RGDSKSALTNLP 220
P+ +A LCCP+T P R D +A+ +LP
Sbjct: 130 PDAAAVASSHDSSALCCPKTPPPAHRPDPATAVPHLP 166
>05_04_0265 -
19547363-19547401,19547688-19547857,19548451-19548661,
19549671-19549982
Length = 243
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 105 APLHPRLRPRLSN*AATCCVVHGPRQPGATQNRH*P------IYRIQNSCTVLTRRAYTF 266
AP+ P++ L PR AT+N P I+ +Q ++L A +F
Sbjct: 92 APVDPKIEKELKKAVQKTAATFAPRASTATKNPAVPGTALYTIFEVQGYASMLLGGALSF 151
Query: 267 NLV 275
NLV
Sbjct: 152 NLV 154
>04_01_0163 + 1853448-1853668,1853963-1854161
Length = 139
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 203 PILSRPWLARSVDNTAGRRSVGEARPKSRVQGGGSXK 93
PI+ PW + S+ R SV P S QG G K
Sbjct: 93 PIVRGPWYSASIAVNHARHSVSCTFPVSAPQGNGLLK 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,584,492
Number of Sequences: 37544
Number of extensions: 269858
Number of successful extensions: 910
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -