Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d10r
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical ...    69   2e-12
Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical pr...    65   3e-11
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...    65   3e-11
Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical pr...    65   3e-11
X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.        65   3e-11
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.        65   3e-11
X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.        65   3e-11
U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4...    65   3e-11
U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4...    65   3e-11
U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4...    65   3e-11
Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical pr...    62   2e-10
X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.        60   8e-10
AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical...    42   2e-04
Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical pr...    31   0.54 
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    29   2.2  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    28   3.8  

>AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical
           protein ZK616.4 protein.
          Length = 436

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 32/68 (47%), Positives = 42/68 (61%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           ER+   LA + P + +L+             AWIGGSIL S+G+FQQMW+S  EYDE GK
Sbjct: 369 ERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGK 428

Query: 306 GHLERKCP 283
             +E+KCP
Sbjct: 429 SIVEKKCP 436


>Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.6 protein.
          Length = 376

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 312 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368

Query: 306 GHLERKC 286
             + RKC
Sbjct: 369 SIVHRKC 375


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 312 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368

Query: 306 GHLERKC 286
             + RKC
Sbjct: 369 SIVHRKC 375


>Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.4 protein.
          Length = 376

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 312 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368

Query: 306 GHLERKC 286
             + RKC
Sbjct: 369 SIVHRKC 375


>X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 312 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368

Query: 306 GHLERKC 286
             + RKC
Sbjct: 369 SIVHRKC 375


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 312 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368

Query: 306 GHLERKC 286
             + RKC
Sbjct: 369 SIVHRKC 375


>X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 312 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368

Query: 306 GHLERKC 286
             + RKC
Sbjct: 369 SIVHRKC 375


>U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4,
           isoform b protein.
          Length = 332

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 268 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 324

Query: 306 GHLERKC 286
             + RKC
Sbjct: 325 SIVHRKC 331


>U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4,
           isoform c protein.
          Length = 362

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 298 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 354

Query: 306 GHLERKC 286
             + RKC
Sbjct: 355 SIVHRKC 361


>U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4,
           isoform a protein.
          Length = 376

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++ A APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 312 DRMQKEITALAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368

Query: 306 GHLERKC 286
             + RKC
Sbjct: 369 SIVHRKC 375


>Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical
           protein T25C8.2 protein.
          Length = 375

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 30/67 (44%), Positives = 41/67 (61%)
 Frame = -3

Query: 486 ERVARDLAARAPSSHRLKSHXXXXXXXXXXXAWIGGSILASIGSFQQMWISSQEYDEGGK 307
           +R+ +++   APS+ ++K              WIGGSILAS+ +FQQMWIS QEYDE G 
Sbjct: 311 DRMQKEIQHLAPSTMKIK---IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367

Query: 306 GHLERKC 286
             + RKC
Sbjct: 368 SIVHRKC 374


>X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.
          Length = 375

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = -3

Query: 390 WIGGSILASIGSFQQMWISSQEYDEGGKGHLERKC 286
           WIGGSILAS+ +FQQMWIS QEYDE G   + RKC
Sbjct: 340 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 374


>AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical
           protein Y53F4B.22 protein.
          Length = 374

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 26/34 (76%)
 Frame = -3

Query: 390 WIGGSILASIGSFQQMWISSQEYDEGGKGHLERK 289
           WIGGSI+AS+ +F++MW+  +EY++ G   + ++
Sbjct: 339 WIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKR 372


>Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical
           protein K07C5.1 protein.
          Length = 395

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -3

Query: 390 WIGGSILASI--GSFQQMWISSQEYDEGG 310
           ++GG++LA++     Q  W+S +EY+EGG
Sbjct: 355 FLGGAVLANLMKDRDQDFWVSKKEYEEGG 383


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 390 WIGGSILASIGSFQQMWISSQEYDEGG 310
           W GGS+LAS   F Q+  +  EY E G
Sbjct: 385 WFGGSMLASTSEFYQVSHTKAEYMERG 411


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 338 SHRRSTTRAERGTSKGNALNLD*VKRISPSSENSA*ILYPVNWSMPILSRPWLARSVDNT 159
           S R S+ R    TS      +  V+  SP+  +    L+P     P L      +S++ T
Sbjct: 536 SRRSSSIRPRSPTSTSQMSTI--VRSRSPTGASDTSSLFPSRTRSPTLQSNTSGQSMERT 593

Query: 158 AGRRSVGEA-RPKS 120
             R SV +A RPK+
Sbjct: 594 TDRLSVRDAVRPKT 607


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 338 SHRRSTTRAERGTSKGNALNLD*VKRISPSSENSA*ILYPVNWSMPILSRPWLARSVDNT 159
           S R S+ R    TS      +  V+  SP+  +    L+P     P L      +S++ T
Sbjct: 536 SRRSSSIRPRSPTSTSQMSTI--VRSRSPTGASDTSSLFPSRTRSPTLQSNTSGQSMERT 593

Query: 158 AGRRSVGEA-RPKS 120
             R SV +A RPK+
Sbjct: 594 TDRLSVRDAVRPKT 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,218
Number of Sequences: 27780
Number of extensions: 205709
Number of successful extensions: 515
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)