Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d10f
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 60 3e-10
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 48 7e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 3e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 2e-04
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 40 2e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 39 4e-04
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 35 0.009
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 31 0.11
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 31 0.15
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 27 1.8
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 2.4
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub... 26 4.2
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 4.2
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 5.6
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 25 5.6
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 25 5.6
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 25 5.6
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 7.4
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 25 7.4
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 9.8
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 59.7 bits (138), Expect = 3e-10
Identities = 36/125 (28%), Positives = 59/125 (47%)
Frame = +3
Query: 159 YGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTG 338
YGGDE+ A+V DPG R+G++ ED PK +P+ G + DG
Sbjct: 6 YGGDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG------------EFSDG------ 47
Query: 339 SKTGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSXHHP 518
R ++ PGME++ +++G V+NWD+ + Y + +++ HP
Sbjct: 48 -------RRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
Query: 519 VLFTE 533
+L TE
Sbjct: 101 ILITE 105
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 48.4 bits (110), Expect = 7e-07
Identities = 38/123 (30%), Positives = 56/123 (45%)
Frame = +3
Query: 168 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKT 347
+EI ALV D G + G+A +D P+A P++VG P H + G + Q S
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG-RPRHH------GIMVG-MGQKDSYV 54
Query: 348 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSXHHPVLF 527
G E + + L P ++ G V+NWD EK+ + + +R HP L
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLL 105
Query: 528 TEA 536
TEA
Sbjct: 106 TEA 108
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 42.7 bits (96), Expect = 3e-05
Identities = 31/125 (24%), Positives = 54/125 (43%)
Frame = +3
Query: 168 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKT 347
+EI +LV DPG R GYA E++P +P+ GV T
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGV--------------------RSDVT 47
Query: 348 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSXHHPVLF 527
G ++ +D ++H P PGMEV+ +G + +W+ + + ++ + ++
Sbjct: 48 GRN-KYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMI 106
Query: 528 TEAVW 542
TE W
Sbjct: 107 TEPSW 111
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 39.9 bits (89), Expect = 2e-04
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Frame = +3
Query: 183 LVFDPGHHSLRVGYAQEDTPKADIPAVV-----GVGPATHIPNSEEKVPDGNITQTGSKT 347
++ D G ++GYA D P P V+ G + + + SK
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 348 GSE-LRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSXHHPVL 524
+E L +I L G + ++ GQ++NWD E+ K +R H L
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFL 127
Query: 525 FTE 533
TE
Sbjct: 128 LTE 130
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 39.9 bits (89), Expect = 2e-04
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Frame = +3
Query: 171 EIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKTG 350
E +V D G ++VGYA+++ P+ P++VG I +EEK GN+ G
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVG----RPILRAEEKT--GNVQIKDVMVG 55
Query: 351 SELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKM-LDYCYSKVIRSPSXHHPVLF 527
E + ++ P ++ + + Q+ ++ FEK+ +D K++ + +PV
Sbjct: 56 DEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVAN 115
Query: 528 TEAVWAT 548
E + T
Sbjct: 116 REKMCET 122
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 39.1 bits (87), Expect = 4e-04
Identities = 35/138 (25%), Positives = 55/138 (39%)
Frame = +3
Query: 120 IKEYIMSGPNGMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNS 299
++E + SGP LV D G LR G+ E PK +V
Sbjct: 6 VREPVFSGPTPSFQNVSNDIPLVIDNGSWQLRAGWGGEKDPKLVFDNLVS---------- 55
Query: 300 EEKVPDGNITQTGSKTGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYC 479
+ D +++T + G++ I+V + R E + NWDL E++LDY
Sbjct: 56 --RYRDRKLSRTSTLVGNDT--LIEVGSRSIARSPFERNV------ISNWDLMEQVLDYT 105
Query: 480 YSKVIRSPSXHHPVLFTE 533
+ K + HP+ TE
Sbjct: 106 FLK-LGIDRMEHPICMTE 122
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 34.7 bits (76), Expect = 0.009
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Frame = +3
Query: 183 LVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKTGSELR 362
+ D G ++ G+A +D PK P VG E+V +I Q GSE +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVG-------RIKHERVMPSSI-QKDMFVGSEAQ 63
Query: 363 HYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYS-KVIRSPSXHHPVLFTE 533
+ R +++Q ++ G + NW E++ Y YS + + + HP+L TE
Sbjct: 64 NL---------RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 31.1 bits (67), Expect = 0.11
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 252 IPAVVGVGPATHIPNSEEKVPDGNITQTGSKTGSELRHYIDVTELHVPRPGMEVQTYMKD 431
+P+ +G A + V DG+ TG + +RH + V + G ++ + D
Sbjct: 425 VPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVLIFLLNNRGYTIEIQIHD 484
Query: 432 G---QVDNWD 452
G ++ NWD
Sbjct: 485 GPYNRIQNWD 494
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.15
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 102 NFYNSIIKEYIMSGPN-GMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGP 278
NFY EY+MSG + G + D++ A + H E P+ AV G+
Sbjct: 677 NFYGQN-DEYVMSGSDDGRFFIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDS 735
Query: 279 ATHIPNSEEKVPDG 320
I N+E P G
Sbjct: 736 TVKIFNTENTPPSG 749
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 335 GLRDVAIRNLFFGIWDVCSWS 273
G RD+ IRNLF W +C S
Sbjct: 341 GTRDLCIRNLFRKTWIICGKS 361
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 240 PKADIPAVVGVGPATHIPNSEEKVPD 317
PKAD+ +V VG +T IP + V D
Sbjct: 329 PKADVHDIVLVGGSTRIPKVQRLVSD 354
>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 359 QLTARFTA-GLRDVAIRNLFFGIWDVCSWSDAHNCWYISFWGILLCITNSQRMMTRIKD* 183
Q+T+ + L++ A ++ ++ V D Y+SF G+L+ I S R + R+
Sbjct: 58 QITSNLNSPDLKEAADYIMYGKVYRVEEAKDEKVSVYVSFGGLLMAIEGSHRKLYRLSLD 117
Query: 182 CTYLV 168
YL+
Sbjct: 118 HVYLL 122
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 365 VSQLTARFTAGLRDVAIRNLFFGIWDVCSWSD 270
+ Q+T G+ D+ N F+ + D SW D
Sbjct: 863 IQQVTFFLAVGMADIVTINFFYLVKDEGSWKD 894
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 226 HKRIPQKLIYQQLWASDQLHTSQIPKKRFLMAT 324
HKR +KL+Y+ A + HT +K + +T
Sbjct: 549 HKRSSRKLLYEDKQAIQEAHTINTKRKLWPQST 581
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 401 RTRNVELCDVYVVSQLTARFTAGLRDVAIRNLFFGIWD 288
R RN E C+ Y+V+++ A L+D+++ L IW+
Sbjct: 272 RGRN-EPCNTYIVAEIVA----ALKDISLEELSEQIWE 304
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 479 TIIKHLLKQIPVVDLSVFHVRLHFHSRTRNVELCDVYVVSQLTARFTAGLRDVAI 315
+I +HL I V+LS F ++V CDVY+VS + + L ++ I
Sbjct: 18 SICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASGQVNDHLMELLI 72
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 365 VSQLTARFTAGLRDVAIRNLFFGIWDVCSWSDAHNCW 255
V++++ F +R + + L F IWD+ N W
Sbjct: 41 VNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFW 77
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 315 DGNITQTGSKTGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYS 485
D +T T + TG +H + L V + T DG V +WD ++ + C S
Sbjct: 267 DKTLTNTYTYTGHRGKH---IWSLVVSSANPIIYTGGNDGSVRSWDYKTRIQESCIS 320
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 342 KTGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDY 476
K+ +L +Y+++ + P GME + G + DL + MLDY
Sbjct: 233 KSMQQLPNYVEMKHIPPPNGGMEA-LFSAAGH-EEIDLLKMMLDY 275
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 95 KIKFLQ*HYKRIYYEWPERHAVRGRRDRCTSL 190
KIK LQ H+K++ W E A R DR T +
Sbjct: 123 KIKRLQSHWKQVLGRWEENIA---RVDRLTEI 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,482
Number of Sequences: 5004
Number of extensions: 49302
Number of successful extensions: 157
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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