Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d09r
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    32   0.074
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.23 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    28   1.6  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    27   2.1  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   2.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.7  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   4.8  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   8.5  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   8.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = -1

Query: 317 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV--R 147
           VNS G+   E   +   F ++  ++ E+ K  +  P    +   S+EE E         R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPNPFYN---SKEESEPLAAHGYIYR 379

Query: 146 DVDVGLETAQKTNEIAKAVEATTYAVNIRDDAEFLPI 36
           DVD+ LET +K  ++    E   Y  N  +D +++ I
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = +1

Query: 49  SASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATG 228
           S+SS   TA   +S++  IS    + S PTSTS T+ S  +S SS  +    +S  S++ 
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 229 LLLSS 243
              SS
Sbjct: 315 SSFSS 319



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +1

Query: 88  STAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGL----LLSSGCFC 255
           ST+  IS    + S PTSTS T+ S  +S SS  + +   S+ S++        SS    
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344

Query: 256 FSGKVIFNTSFS*TQLPSEFTS 321
            S     ++SFS T   S+ +S
Sbjct: 345 SSSSSPSSSSFSSTTSSSKSSS 366


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +1

Query: 64  MLTAYVVASTAFAI--SLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLL 237
           ++ + V A+ +F +  + V+WA+   T      L++++S+    T    +SV +A GLLL
Sbjct: 70  IILSIVSAALSFYLDTNAVWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = -1

Query: 230 RPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVEATTYAVNIRDDA 51
           R   +  ++    V  E+ E T   +  DV++  + + + N +A+  + T+    + DD 
Sbjct: 118 RQTIDRKKSLERRVREEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDI 177

Query: 50  E 48
           E
Sbjct: 178 E 178


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 655 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 560
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -1

Query: 581 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 402
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 401 VKAKN 387
            K  N
Sbjct: 163 SKKLN 167


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 617  YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 462
            +  Y  F    +E   +T S + NL  E+++L NM+ EL  KFP +   GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 260  LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 138
            +K ++PE + +PV    +  ST  + +E E T +++V   +
Sbjct: 908  IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +1

Query: 31  YGIGKNSASSLMLTAYVVASTAFAISLVFWAVSKPTSTS---RTLL---SVVNSISSRLT 192
           Y + ++S +S++  AY+  S +   S V   ++ PTS+S    +LL   S+  S SS   
Sbjct: 387 YSVVQSSLASIISNAYIATSKSGLNSGVSTLLASPTSSSTFVTSLLRRSSIDGSASSSSA 446

Query: 193 FVEVVSVGSAT 225
            + V +V S+T
Sbjct: 447 SLAVPTVSSST 457


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 49  SASSLMLTAYVVASTAFAISLVFWAVSKPTSTS 147
           S S+    +  +A+T+F  SLV  A + P+STS
Sbjct: 463 SVSATPTVSMSIAATSFGSSLVLTASASPSSTS 495


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 9   HLYLIKLIWNRQELRIVSDVDSVR 80
           H Y+ + +WN Q L I  D+ SVR
Sbjct: 168 HSYMFQFVWNHQALAIFPDL-SVR 190


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 668 AAVSAAPQYYHGSSHWPYHHYDPFSP 591
           A  +A PQYY     +P  HY P  P
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQP 527


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 534 NATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSPAWLRTERHQRESEKWSAD 376
           + TL +    ++  VP     RT  +R  SD  +  W+ + R Q+  E+W  D
Sbjct: 583 DGTLIESARNSIDAVPTDRLLRTL-KRLASDSRNIVWILSGRSQKFMEEWMGD 634


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 266 FPLKQKQPEDSKRPVAEPTETTSTNVSRE 180
           F  K    +  K P  EPTE   +N+S E
Sbjct: 885 FSFKAFGIDSKKSPTPEPTEMAESNISEE 913


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = +1

Query: 49  SASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATG 228
           S SS   ++ +++S     S++  + S PTS+S    S + +ISS ++   + S  S+  
Sbjct: 520 STSSSTPSSSIISSPM--TSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVS 577

Query: 229 LLLSS 243
            +LSS
Sbjct: 578 SILSS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,827
Number of Sequences: 5004
Number of extensions: 63523
Number of successful extensions: 222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)