Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d09f
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.1
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 2.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.8
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 6.4
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 6.4
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 6.4
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 25 8.5
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 25 8.5
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 80 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 175
P H+TT R I +I I PS+LT G +C HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 154 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 333
E + + +W+++ +MQ D ++L F I N G++ Q +I L G + ++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162
Query: 334 VKAKN 348
K N
Sbjct: 163 SKKLN 167
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 118 YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 273
+ Y F +E +T S + NL E+++L NM+ EL KFP + GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 475 LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 597
+K ++PE + +PV + ST + +E E T +++V +
Sbjct: 908 IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 67 AAVSAAPQYYHGSSHWPYHHYDPFSP 144
A +A PQYY +P HY P P
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQP 527
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 201 NATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSPAWLRTERHQRESEKWSAD 359
+ TL + ++ VP RT +R SD + W+ + R Q+ E+W D
Sbjct: 583 DGTLIESARNSIDAVPTDRLLRTL-KRLASDSRNIVWILSGRSQKFMEEWMGD 634
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 469 FPLKQKQPEDSKRPVAEPTETTSTNVSRE 555
F K + K P EPTE +N+S E
Sbjct: 885 FSFKAFGIDSKKSPTPEPTEMAESNISEE 913
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +1
Query: 118 YHHYDPFSPYVRESMLDTHSLWSNL 192
+ H+DP+S ++ ++ + H W+ L
Sbjct: 292 FFHFDPYSLFISNNLEEIHINWNIL 316
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 8.5
Identities = 30/117 (25%), Positives = 43/117 (36%)
Frame = +1
Query: 235 SLKFPSIINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPW 414
+L+ P+I ++G V ++ L +V+ G M A SA + NLP
Sbjct: 157 NLRSPAIDSDGTVLAPIQTSNVDLGSQYYSSPHVRPAVGATM--AGSAMRTFPS--NLPL 212
Query: 415 DVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV 585
S V I PL P TS +REE ++T SNV
Sbjct: 213 GHPPPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDWTVTSNV 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,662
Number of Sequences: 5004
Number of extensions: 50527
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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