Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d09f
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 33 0.17
05_03_0515 + 14930736-14932697 30 1.2
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 29 2.2
04_04_0347 + 24564589-24565296 29 2.2
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 2.8
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 2.8
11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488... 29 3.8
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 28 5.0
10_08_0933 + 21661209-21662813 28 6.6
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 28 6.6
02_04_0392 - 22578488-22578811,22578895-22578900 27 8.7
02_01_0393 - 2863335-2864534 27 8.7
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 241 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 339
K ++ E +VEGD Y + +H PG+ K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>05_03_0515 + 14930736-14932697
Length = 653
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 40 IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLD 216
+ L +C + V +P + +W YH + YV +S+ ++ S WSN + L
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLS 367
Query: 217 NMMKE 231
+ +
Sbjct: 368 SCFSD 372
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 253 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 411
I ++G++EG + I H+P E D+ V + + + +S H K N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 37 MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 138
M L+ LLAA SAA +H ++ PY HH+ P+
Sbjct: 5 MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 484 KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRD 591
+QP SKRP AE T TT++ ++ +E ++ VRD
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLEALYDA-VRD 730
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 148 VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQIS 297
+++++L+ LA+E+Q D+++ EL K S + R+E + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347
>11_06_0296 +
22046649-22048202,22048524-22048703,22048811-22048860,
22049443-22049564,22051007-22051119,22051227-22051436,
22052152-22052265,22052529-22052658,22053010-22053143,
22053997-22054077,22054181-22054267
Length = 924
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +1
Query: 73 VSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPS 252
++ A +++ G++ W + S +DT SLW +L N +H + ++L S
Sbjct: 376 ITDAVRFFKGNNSWSFLICPLSSRCDGRKFVDTSSLWGHLCN--KHPEGHWRKLQSVLGS 433
Query: 253 IINEGRVEGD 282
++E GD
Sbjct: 434 KLSENTSVGD 443
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +1
Query: 19 VERSTRMIALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLAN 198
V T ++ L++C +L ++ + G++ + D SP+ D ++ WS+ +N
Sbjct: 75 VSNKTVIVTLLVCVILTTIA-----FLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSN 129
Query: 199 EMQH 210
+ H
Sbjct: 130 LVSH 133
>10_08_0933 + 21661209-21662813
Length = 534
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +3
Query: 189 PCQRNATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSPAWLR 317
P +A QH + + +P R TR S + PAW R
Sbjct: 181 PSSSSAAASQHSQHRTLVLPDRSYRPTRSLFATSSLSIPAWAR 223
>06_03_1033 -
27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
Frame = +1
Query: 307 PGY-EQKDINVKAKNGVLMVQANSAFNH----YLKIQNLPWD------------VNSEGS 435
PGY E ++ +N +++ +AN+ FN YL +++ W +E
Sbjct: 525 PGYYEDGSFGIRLENVLIVKEANTKFNFGDKGYLAFEHITWTPYQTKLIDTTLLTPAEIE 584
Query: 436 WV--YEKDVLKITFPLKQKQPEDSKRPVAEP 522
WV Y D KI P +Q ++ R EP
Sbjct: 585 WVNAYHSDCRKILQPYLNEQEKEWLRKATEP 615
>02_04_0392 - 22578488-22578811,22578895-22578900
Length = 109
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 85 PQYYHGSSHWPYHHYDPF 138
P YY+ ++PYHHY P+
Sbjct: 91 PPYYY---YYPYHHYSPY 105
>02_01_0393 - 2863335-2864534
Length = 399
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +3
Query: 63 AGGGLGRATVLPWLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVE 242
AG GL LP L S +R + S+ + GH L++ AT G +
Sbjct: 2 AGAGLPSWWALPLLRVPTSSAVRIIPSIAAAAARGHDLLLLRASSSEATRGFSSSTSAPA 61
Query: 243 VPQH 254
P H
Sbjct: 62 APAH 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,138
Number of Sequences: 37544
Number of extensions: 347940
Number of successful extensions: 844
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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