Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d09f
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       30   1.2  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             30   1.6  
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)            30   1.6  
SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   28   5.0  
SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)                28   5.0  
SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)                28   6.6  
SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)                   27   8.8  
SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)                        27   8.8  

>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 448 KDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTE 576
           K   K   P ++++ E+ +RP  +PT+   T + R   E  T+
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTK 469


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 475 LKQKQPEDSKRPVAEPTETTSTNVSRE 555
           ++Q Q + SKRP   P ETTS N+ ++
Sbjct: 182 IEQSQADRSKRPYDPPVETTSNNMRKK 208


>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
          Length = 347

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 475 LKQKQPEDSKRPVAEPTETTSTNVSRE 555
           ++Q Q + SKRP   P ETTS N+ ++
Sbjct: 170 IEQSQADRSKRPYDPPVETTSNNMRKK 196


>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 415 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTE 528
           DVN +G  VY KD L+  F L  K  +DSK  RP  +PT+
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTK 149


>SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)
          Length = 552

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 415 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTETTSTNVSREEMEFTTESNVR 588
           DV+ +G  VY KD L+  F L  K  +DSK  RP  +PT+  S+   R +      + +R
Sbjct: 423 DVDGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTKVPSSPGVRSDELIDVMATIR 480


>SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)
          Length = 315

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 280 DKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNH-YLKIQNLPW 414
           D Y++  +    EQ+D N   K G   VQ    FN+ Y  I+ L W
Sbjct: 22  DDYEVDENSDDEEQEDPNDYCKGGYHPVQLGDLFNNRYSVIRKLGW 67


>SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 385 HYLKIQNLPWDVNSEGSWVYEKDVLKITFPLKQKQP 492
           H+L+I  LP +VNS+    ++ D +  + P+    P
Sbjct: 839 HHLRISPLPINVNSQSGSTFQADCIIYSEPVDDSAP 874


>SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 422

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 99  WLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRN-ATLG 215
           W+V L+  P+ PL    S KH+   F     C++N AT+G
Sbjct: 368 WMVFLSC-PVNPLVYAYSSKHIRDAFKRGLKCKKNTATIG 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,482
Number of Sequences: 59808
Number of extensions: 388239
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)