Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d08r
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    31   0.24 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.72 
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.9  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        27   3.9  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    26   6.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   8.9  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   8.9  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = -3

Query: 638  AQADAEAMRYLSMLLYPLCVAGAIYSLVYEPHKS---WYSWALHSIVNGVYAFGFLFMLP 468
            A  D + M   ++L+ P       Y     P  +   WY W  HS++N  Y        P
Sbjct: 793  ASVDKQFMIGTALLISPALEPNTTYIQGIIPGDNDTIWYDWYNHSVINHDYDENITMSAP 852

Query: 467  QLFVNYRLRSVAALPWRAFMYKAFNTFIDDVFAFIITM 354
              +VN  +R    +P +   Y  + +  ++ ++ +I M
Sbjct: 853  LGYVNIAVRGGNIIPLQQPGYTTYES-RNNPYSLLIAM 889


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 728  NQSLHLRVSFKAWKLRVXRDTSSDANEKTTAQAD 627
            N+ LH+R+     KL++    SSD  +K TA+ +
Sbjct: 922  NEELHIRLDKLTGKLKIEESKSSDLGKKLTARQE 955


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 110 YYRRFLQVLDTIKTIFTFDSLFYVY 36
           YY+ F+    T  TIF F  L Y+Y
Sbjct: 44  YYQSFVVYKATANTIFQFSYLLYIY 68


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 752 CTY*VMESNQSLHLRVSFKAWKLRVXRDTSSDANEKTTAQADAEAMRYL 606
           C   VM  +Q L  R  +K   + +  DT+S+     T Q   +AMR+L
Sbjct: 149 CINDVMSMSQLLIQRYGYKQEDMVIMTDTASNQRAIPTRQNMLDAMRWL 197


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 557 VYEPHKSWYSWALHSIVNGVYA 492
           +YEP  +WY  +LH I   V A
Sbjct: 66  IYEPQLTWYLSSLHRITGCVVA 87


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 497 YAFGFLFMLPQLFVNYRLRSVAALPWRAFMYKAFNTFIDDVFA 369
           ++F FLF L Q+F+ Y   S   L +  F +     F+  +F+
Sbjct: 131 FSFSFLFFLSQIFIVY-FSSFPILHFLFFFFLCVCVFLSFLFS 172


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 594 IPFVCGRRHILPCL*TA*KLVLLGFTQHSEWS 499
           IP +CGRR  L CL  A K +      +  WS
Sbjct: 78  IPLLCGRRLFLVCLMAATKFLQDRSFSNRAWS 109


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 572 AIYSLVYEPHKSWYSWALHSIVNGVYAFGF 483
           AIY+ V  PH S   + L SI+N  +   F
Sbjct: 236 AIYNCVGHPHPSDIDYFLKSIMNDEFVIAF 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,859
Number of Sequences: 5004
Number of extensions: 59184
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)