Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d08r
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989...   182   4e-46
01_05_0283 - 20354065-20354154,20354579-20354890,20355566-203557...    29   5.3  
12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135     28   9.3  

>04_03_1048 -
           21998214-21998413,21998507-21998674,21998758-21998977,
           21999571-21999761,21999869-21999962,22000257-22000500,
           22001314-22001411,22001509-22001600,22001695-22001809,
           22001890-22002036,22003031-22003255
          Length = 597

 Score =  182 bits (442), Expect = 4e-46
 Identities = 82/140 (58%), Positives = 103/140 (73%)
 Frame = -3

Query: 674 RDTSSDANEKTTAQADAEAMRYLSMLLYPLCVAGAIYSLVYEPHKSWYSWALHSIVNGVY 495
           RD  S A  KT  + DA AM+YL+ +L  L    +IYSL YE HKSWYSW L S+ + VY
Sbjct: 415 RDRESYAQNKTK-EYDAIAMKYLTYVLLFLVFCFSIYSLKYEKHKSWYSWILSSLTSCVY 473

Query: 494 AFGFLFMLPQLFVNYRLRSVAALPWRAFMYKAFNTFIDDVFAFIITMPTAHRMACFRDDL 315
            FGF+ M PQLF+NY+L+SVA +PWR   YK  NT IDD+FAF+I MP  HR++ FRDD+
Sbjct: 474 MFGFIMMCPQLFINYKLKSVAHMPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDV 533

Query: 314 VFLVYLYQRWLYPVDKTRVD 255
           +FL+YLYQRW+YPVDK RV+
Sbjct: 534 IFLIYLYQRWVYPVDKKRVN 553


>01_05_0283 -
           20354065-20354154,20354579-20354890,20355566-20355763,
           20356371-20356754,20357445-20357858,20359771-20360022
          Length = 549

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = -2

Query: 489 RFSIHVAATVRELSASFCGSAAVARLHVQSLQHVH-RRCVRVYNNHADRASHGLLQGRSS 313
           R   H+AA  R      C S     +  ++  H+H +R + V        S   + G+SS
Sbjct: 457 RLHFHLAAVFRHPK---CPSVP-KEVFAKARHHIHLKRRLNVKKAGQQARSRPHILGQSS 512

Query: 312 LPCLSVSEMVVSCRQNSCRYRSEYGCKFRR 223
               + +  V S ++N C     YGCK++R
Sbjct: 513 QQQQN-NNPVTSVKENQCVMDWHYGCKYQR 541


>12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135
          Length = 703

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 716 HLRVSFKAWKLRVXRDTSSDANEKTTAQADAEA-MRYLSMLLYPLCVAGAIYSLVY 552
           H  +SFK + +       +   EK TAQA  +  +  L M    + + GAI SLV+
Sbjct: 502 HPTISFKTYHVEECEHFETKIEEKQTAQAQRDRHLGILCMAPEDIEILGAIPSLVF 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,847,938
Number of Sequences: 37544
Number of extensions: 384905
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)