Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d08r
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 169 3e-42
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011) 32 0.58
SB_47333| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.1
SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022) 28 7.2
SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044) 28 7.2
SB_25830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_4374| Best HMM Match : GCS (HMM E-Value=6.2) 28 7.2
SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1) 28 9.5
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 28 9.5
SB_58454| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21) 28 9.5
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 169 bits (410), Expect = 3e-42
Identities = 72/122 (59%), Positives = 88/122 (72%)
Frame = -3
Query: 620 AMRYLSMLLYPLCVAGAIYSLVYEPHKSWYSWALHSIVNGVYAFGFLFMLPQLFVNYRLR 441
A +YLS L+PL V IYSL Y HK WYSW L + + FGF+ M PQLF+NY+L+
Sbjct: 448 AFKYLSWALFPLLVCYCIYSLFYVEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLK 507
Query: 440 SVAALPWRAFMYKAFNTFIDDVFAFIITMPTAHRMACFRDDLVFLVYLYQRWLYPVDKTR 261
SVA LPWR YKA NTFIDD+FAF+I MP +R+ CFRDD+VF +YLYQRW+Y VD R
Sbjct: 508 SVAHLPWRMMTYKALNTFIDDLFAFVIKMPMMYRIGCFRDDIVFFIYLYQRWIYKVDHKR 567
Query: 260 VD 255
V+
Sbjct: 568 VN 569
>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
Length = 1178
Score = 31.9 bits (69), Expect = 0.58
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 1/132 (0%)
Frame = -3
Query: 761 WDKCTY*VMESNQSLHLRVSFKAWKLRVXRDTSSDANEKTTAQADAEAMRYLSML-LYPL 585
W +C S R +W R+ S + + A DA A++ L + L+P
Sbjct: 953 WSRCGLLSRPITTSPAKRRKTPSW--RILAPALSPSATQLAACCDAAAVQALRLGGLFPY 1010
Query: 584 CVAGAIYSLVYEPHKSWYSWALHSIVNGVYAFGFLFMLPQLFVNYRLRSVAALPWRAFMY 405
C Y+ + W A+H I N ++ LF+ Y VAA P R
Sbjct: 1011 CAYTHAYTYKMIADQLWS--AMHEIPNRIHQSDLLFLPTDCGYKYAPTVVAARPLRTKSA 1068
Query: 404 KAFNTFIDDVFA 369
+ + D++A
Sbjct: 1069 AVVSRELADIYA 1080
>SB_47333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 626 AEAMRYLSMLLYPLCVAGAIYSLVYEPHKSWYSWALHSIVNGVY 495
AE + L +LYP V +++ + Y P +SW L + VY
Sbjct: 473 AEIAKILETVLYPN-VLNSVFDIFYRPRRSWKEKVLKQSIFKVY 515
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 494 HTLHSLCCVKPRSTNFYA---VHRQGSIWRLPHT-KGIAT 601
HT LC + PR T +A H QG +PHT KG+ T
Sbjct: 3078 HTHIGLCTLSPRRTRAFAPYPPHAQGPSHPIPHTHKGLRT 3117
>SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)
Length = 645
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 507 EWSVCFRFSIHVAATVRELSASFCGSAAVARLHVQS 400
EW+ C F H+AA++R S+ +AV LH++S
Sbjct: 374 EWTFCL-FVTHLAASIRYPSSIKVYLSAVRSLHIES 408
>SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)
Length = 464
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 696 SLETSSXEGH*LRCKRKDDCPSRCGSDAIFIDVAIP 589
S+ S+ H C RKD +CG ++ID IP
Sbjct: 226 SIPDSAIALHNYVCLRKDGAVGQCGGVCVYIDSRIP 261
>SB_25830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 482 ENRKHTLHSLCCVKPRSTNFYAVHRQGSIWRLPH 583
E R H ++S CC + ++A+H G W H
Sbjct: 149 EQRDHEMYSSCCYSNTVSTYHALH-PGHAWERVH 181
>SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)
Length = 326
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 696 SLETSSXEGH*LRCKRKDDCPSRCGSDAIFIDVAIP 589
S+ S+ H C RKD +CG ++ID IP
Sbjct: 226 SIPDSAIALHNYVCLRKDGAVGQCGGVCVYIDSRIP 261
>SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)
Length = 398
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 635 QADAEAMRYLSMLLYPLCVAGAIYSLVYEPHKS 537
+A E RYLS LY L V Y+ +PH S
Sbjct: 118 RAQHETARYLSQPLYVLYVQATAYNEACDPHLS 150
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 668 TSSDANEKTTAQADAEAMRYLSMLLYPLCVAGAIYSLV 555
TSSD + A + + Y+ + YP C+ GA Y V
Sbjct: 817 TSSDLSWSHDLLAVGDELGYIRLFRYPCCIEGAQYHQV 854
>SB_58454| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)
Length = 322
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 355 MVIINANTSSMNVLKALYMKARHGSAATERSR*FTNSCGNMNR 483
+ +I+ ++SS+++L+ L + + A E F SC N+N+
Sbjct: 79 LAVISVDSSSVDLLRDLGVAVNNAMARREGRHLFEQSCTNLNQ 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,699,728
Number of Sequences: 59808
Number of extensions: 475361
Number of successful extensions: 1139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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