Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d08f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    28   1.2  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    26   3.7  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    26   4.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   6.5  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    25   6.5  

>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = -3

Query: 299 TEF--DEVPSSSGCCFKEA*NTKFCTGLEVK-YEEKHLSPRRHSGGMNISANVHIV---L 138
           TEF  DEVP+S+G   K       C  + +  +  +H S    +G   I  N+ +V    
Sbjct: 75  TEFKQDEVPNSNG---KSIPTFHPCNNIGINDFNHQHYSRVCRNG---IDINLIVVGESS 128

Query: 137 ITYTTNINVRIKDTDTNFIPKREL 66
           +  TT +N  ++  DTNF PK+ +
Sbjct: 129 LGKTTFVNSFLQSNDTNFRPKKTM 152


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 386 TMEHYICMLSCWMIAN 433
           T+ H +C L+CW+I N
Sbjct: 209 TLAHEVCHLACWIIDN 224


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 506 HKQPHLTYYNIMIKKKFWGRPTSPSLCSYIH 598
           H  P + +Y +++   F+G    P LC+  H
Sbjct: 167 HISPGMKHYLLLLSVSFYGIQNDPLLCTRTH 197


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 137 ITYTTNINVRIKDTDTNFIPKRELFLSVPDLRISDF 30
           I+Y+T I+ R K      +PKRE +  +   ++SD+
Sbjct: 120 ISYSTTID-RFKQNLLFLLPKREFYSLIDACKVSDY 154


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 197 LSPRRHSGGMNISANVHIVLITYTTNINVR--IKDTDTN 87
           LSP   S  + +  N   V + +TT    R  IKDT+ N
Sbjct: 183 LSPSSSSESLKLVVNEEKVRVAFTTEATYRIFIKDTEVN 221


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 439 KSFDEIRQTHPLHTWPLIKFVEPQAATFNLLQHNDKEKILGKTDISIL 582
           KS D +  T       ++KFVE    T + ++ N++ K +  TD+ ++
Sbjct: 103 KSTDIVHITEQQAQDNILKFVERHIITSSPIEWNNEYKTIDGTDVHVI 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,015
Number of Sequences: 5004
Number of extensions: 54894
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)