Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d08f
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    28   5.0  
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200...    27   8.7  

>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 410 LSCWMIANCINHLMKFGKHIRYIHG 484
           L  +++  C+ H  +FGK +R +HG
Sbjct: 322 LPSFIVLKCLQHFKEFGKVVRPLHG 346


>02_04_0589 -
           24117688-24119282,24119881-24119908,24120004-24120089,
           24120196-24120220,24121188-24121326,24122344-24122567,
           24122674-24122691
          Length = 704

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +1

Query: 229 VQNLVFYASLKQQPLEEGTSSNSVTKVHTLLNFDYRNPASINVQLNIPRKTRNNGTLYMH 408
           V N+ FY + ++Q  E  + +  + K+   L+ + + P      L   R+   +   Y+ 
Sbjct: 38  VGNMSFYTT-EEQAYELFSRAGEIRKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYIS 96

Query: 409 VVMLDDSKLYKSFD 450
             MLDD  +   FD
Sbjct: 97  GTMLDDRPIRVDFD 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,673
Number of Sequences: 37544
Number of extensions: 314281
Number of successful extensions: 717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)