Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d08f
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22) 31 0.96
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 30 1.3
SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_9602| Best HMM Match : RVT_1 (HMM E-Value=1.6) 30 1.7
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_49526| Best HMM Match : HSBP1 (HMM E-Value=0.28) 29 2.2
SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28) 29 2.2
SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27) 29 2.2
SB_43536| Best HMM Match : DUF1410 (HMM E-Value=3.5) 29 2.2
SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06) 29 2.9
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_46| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14) 28 5.1
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0) 28 5.1
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 28 6.7
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 28 6.7
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08) 28 6.7
SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8) 27 8.9
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15) 27 8.9
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1) 27 8.9
SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41) 27 8.9
SB_13974| Best HMM Match : 7tm_1 (HMM E-Value=1e-04) 27 8.9
SB_9593| Best HMM Match : RVT_1 (HMM E-Value=0.017) 27 8.9
>SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 46 RSGTDKNSSLFGMKFVSVSLILTLIFVVYVINTI 147
R+ T + SSLF + + VS ILTL+F+++V + I
Sbjct: 7 RTRTPRWSSLFSRRCIIVSAILTLVFLIFVSSQI 40
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 31.1 bits (67), Expect = 0.72
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 605 YNCGYMSIRMEMSVFPRIFSLSLCCSKLNVAAC 507
++C ++S+R+ V PR+F+ C L+V C
Sbjct: 1136 FSCVHLSVRVLSPVCPRVFTCLYACVNLSVCVC 1168
Score = 31.1 bits (67), Expect = 0.72
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 605 YNCGYMSIRMEMSVFPRIFSLSLCCSKLNVAAC 507
++C ++S+R+ V PR+F+ C L+V C
Sbjct: 1173 FSCVHLSVRVLSPVCPRVFTCLYACVNLSVCVC 1205
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 605 YNCGYMSIRMEMSVFPRIFSLSLCCSKLNVAAC 507
+ C ++S+R+ V R+F+ C L+V C
Sbjct: 1010 FACVHLSVRVRSPVCSRVFTCLFACVHLSVRVC 1042
>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
Length = 431
Score = 30.7 bits (66), Expect = 0.96
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 325 FDYRNPAS-INVQLNIPRKTRNNGTLYMHVVMLDDSKLYKSFDEIRQTHPLHTWPLIKFV 501
F+Y N + + +Q NIP + +NG + + VV + + S I ++ H L+
Sbjct: 65 FNYTNTINELTIQANIPWQNIDNGAVILAVVFKNFKRTLHSTSSIDRSLDSHVLSLVLHP 124
Query: 502 EPQAA-TFNLLQHNDKEKILGKTDISILMLI 591
P++ N+ D + TD +L L+
Sbjct: 125 NPRSVLKKNVTMTFDHNSKISPTDSFVLDLL 155
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +1
Query: 328 DYRNPASINVQLNI--PRKTRNNGTLYMHVVMLDD--SKLYKSFDEIRQTHPLHTWPLIK 495
D+ + A+ +L++ R+ +N G L + + D+ +K + DE + L+K
Sbjct: 406 DFTDSAAKPKELSLIDSRRAQNCGILLTKLKLSDEEITKAILTIDEEEELSKDMVEQLLK 465
Query: 496 FVEPQAATFNLLQHNDKEK 552
+V P AA NLL N+KEK
Sbjct: 466 YV-PTAAEKNLLNENNKEK 483
>SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 46 RSGTDKNSSLFGMKFVSVSLILTLIFVVYVINTIWTLAEIFIPPECRRGDKCFSSYLT 219
R G K S + + + +++I+ +I ++ +I I T+ I PP + FSS T
Sbjct: 299 RMGNKKVVSSYIIIIIIITIIIIIIIIITIIIIIITIIIIIHPPSSSQTSSSFSSTTT 356
>SB_9602| Best HMM Match : RVT_1 (HMM E-Value=1.6)
Length = 453
Score = 29.9 bits (64), Expect = 1.7
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Frame = +1
Query: 55 TDKNSSLFGMKFVSVSLILTLIFVVYV-----INTIWTLAEIFIPPECRRGDKCFSSYLT 219
T + S G++F ++ T IF + ++T+ L+ P +C +K S+ +
Sbjct: 45 TRQQSPYQGLQFFVPDMLETSIFQSEIENSNLVDTMLILSLSKCPLKCEHNNKSNISFFS 104
Query: 220 SNPVQNLVFYASLKQQPLEEGTS---SNSVTKVHTLLNFDYRNPASIN 354
P+Q + + + PL+ G S SN+ + L NF Y+ P+ +N
Sbjct: 105 GQPMQGPMSRMNHPRGPLQPGKSTMESNNFAESRKLTNF-YK-PSGLN 150
>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 895
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 193 DKCFSSYLTSNPVQNLVFYASLKQQPLEEGTSS 291
DKCFSS+L +N + N +F++ Q + E SS
Sbjct: 677 DKCFSSFLNNN-ILNSIFFSDTDHQEIIEICSS 708
>SB_49526| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 469
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 193 DKCFSSYLTSNPVQNLVFYASLKQQPLEEGTSS 291
DKCFSS+L +N + N +F++ Q + E SS
Sbjct: 356 DKCFSSFL-NNDILNSIFFSDTDNQEIIEICSS 387
>SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 565
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 193 DKCFSSYLTSNPVQNLVFYASLKQQPLEEGTSS 291
DKCFSS+L +N + N +F++ Q + E SS
Sbjct: 452 DKCFSSFL-NNDILNSIFFSDTDNQEIIEICSS 483
>SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)
Length = 1387
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 233 CTGLEVKYEEKHLSPRRHSGGMNISANVHIVLITYTTNINVRIKDTDTNFI 81
C G ++KY + S H GGM + V T+ + N+ I DT+ N I
Sbjct: 1158 CQGKQLKYLRQFGSAGTHKGGMRWPSGV-----TFDSENNILISDTENNRI 1203
>SB_43536| Best HMM Match : DUF1410 (HMM E-Value=3.5)
Length = 344
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 193 DKCFSSYLTSNPVQNLVFYASLKQQPLEEGTSS 291
DKCFSS+L +N + N +F++ Q + E SS
Sbjct: 256 DKCFSSFL-NNDILNSIFFSDTDHQEIIEICSS 287
>SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 193 DKCFSSYLTSNPVQNLVFYASLKQQPLEEGTSS 291
DKCFSS+L +N + N +F++ Q + E SS
Sbjct: 187 DKCFSSFL-NNDILNSIFFSDTDHQEIIEICSS 218
>SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)
Length = 798
Score = 29.1 bits (62), Expect = 2.9
Identities = 29/82 (35%), Positives = 38/82 (46%)
Frame = +1
Query: 202 FSSYLTSNPVQNLVFYASLKQQPLEEGTSSNSVTKVHTLLNFDYRNPASINVQLNIPRKT 381
F SYLTS + V + LE G +SV + LL Y +P I +
Sbjct: 714 FRSYLTSRKLYVRVEDCKSSLRSLERGVPQSSV--LGPLLYLAYTSP--------IAQTI 763
Query: 382 RNNGTLYMHVVMLDDSKLYKSF 447
+G LY H+ LDDS+LY SF
Sbjct: 764 ARHGILY-HLY-LDDSQLYVSF 783
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -3
Query: 176 GGMNISA--NVHIVLITYTTNINVRIKDTDTN 87
GG+ + A N H+ IT TTNIN+ + +TN
Sbjct: 13 GGIEVKAVENKHLHSITRTTNININENNDNTN 44
>SB_46| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 193 DKCFSSYLTSNPVQNLVFYASLKQQPLEEGTSS 291
DKCFSS+L +N + N +F+ Q + E SS
Sbjct: 35 DKCFSSFL-NNDILNSIFFPDTDHQEIIEICSS 66
>SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14)
Length = 404
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 193 DKCFSSYLTSNPVQNLVFYASLKQQPLEEGTSS 291
DKCFSS+ +N + ++ F++ Q + E SS
Sbjct: 271 DKCFSSFPNNNILNSIFFFSDTDHQEIIEICSS 303
>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
Length = 876
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/27 (37%), Positives = 22/27 (81%)
Frame = +1
Query: 61 KNSSLFGMKFVSVSLILTLIFVVYVIN 141
++SS FG +F++++ ILT++ V+ V++
Sbjct: 213 ESSSFFGPRFIAITGILTVLLVIGVVH 239
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 88 FVSVSLILTLIFVVYVINTIWTLAEIFIPPECRRGDKC 201
F+++ + T IFVV V+N I+ +E P C +C
Sbjct: 1140 FITIVITTTPIFVVVVVNIIF-FSESLCEPACPYNQQC 1176
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 220 SNPVQNLVFYASLKQQPLEEGTSSNSVTKVHTLLNFDYRNPASIN 354
S+PV +FY S+ +Q E + + LL + Y + A+IN
Sbjct: 2786 SSPVFYAMFYGSMAEQKAEITVADSDADSFMELLRYAYFDEATIN 2830
>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
Length = 535
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 133 VINTIWTLAEIFIPPECRRGDKCFSSYLTSNPV 231
V + T A+ P+C + D+C S LTS P+
Sbjct: 173 VSKEVQTFAKYGFYPKCLKNDQCKVSVLTSKPI 205
>SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)
Length = 306
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 433 ICYHPT*QHAYIVFHCYVFYVVYLTAH*WKPGSDSQNSI 317
IC+ P+ H V C+VF+ +Y+ H S SQ S+
Sbjct: 66 ICFQPSCIHVSSVVLCFVFFGLYI--HERSNSSKSQKSV 102
>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -3
Query: 266 CCFKEA*NTKFCTGLEVKYEEKHLSPRR-HSGG 171
CC KE G Y++K PRR H GG
Sbjct: 327 CCMKEIQKLSCAHGKHTAYQDKSCMPRRAHIGG 359
>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
Length = 594
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 169 IPPECRRGDKCFSSYLTSNPVQNLVFYASLKQQP 270
I PE ++ KCF++ T N++F+ +Q+P
Sbjct: 123 IGPESKQNVKCFTNIKTCTSGLNVLFWLRYRQKP 156
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 167 NISANVHIVLITYTTNINVRIKDTDTNFIPKRELFLSVPDL 45
N+ N++IVL VR++D N + + L +PD+
Sbjct: 587 NLQENINIVLEDCEVPEQVRLEDDSQNKVSTKAKLLDIPDI 627
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +1
Query: 277 EGTSSNSVTKVHTLLNFDYRNPASINVQLNIPRKTRNNGTLYMHVVMLDDSKLYKSFDEI 456
E TS+ + V ++ R+P VQLN R RN GT M D KL FD +
Sbjct: 2089 ENTSTGTTEGVPPGEHYITRDPEVYGVQLN--RSRRNTGTKLFKFDMRVDEKL-SLFDRV 2145
Query: 457 RQ 462
+
Sbjct: 2146 NE 2147
>SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 76 FGMKFVSVSLILTLIFVVYVINTIWTLAEIFI 171
FG++ S++ T VVY++NT+ L +++I
Sbjct: 55 FGLRTASLACQRTTKAVVYILNTMGILVDVYI 86
>SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 76 FGMKFVSVSLILTLIFVVYVINTIWTLAEIFI 171
FG++ S++ T VVY++NT+ L +++I
Sbjct: 299 FGLRTASLACQRTTKAVVYILNTMGILVDVYI 330
>SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41)
Length = 523
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 76 FGMKFVSVSLILTLIFVVYVINTIWTLAEIFI 171
FG++ S++ T VVY++NT+ L +++I
Sbjct: 306 FGLRTASLACQRTTKAVVYILNTMGILVDVYI 337
>SB_13974| Best HMM Match : 7tm_1 (HMM E-Value=1e-04)
Length = 260
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 145 IWTLAEIFIPPECRRGDKCFSSYLTSNPV 231
+ T A+ P+C + D+C S LTS P+
Sbjct: 5 VQTFAKYGFYPKCLKNDQCKVSVLTSKPI 33
>SB_9593| Best HMM Match : RVT_1 (HMM E-Value=0.017)
Length = 574
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 76 FGMKFVSVSLILTLIFVVYVINTIWTLAEIFI 171
FG++ S++ T VVY++NT+ L +++I
Sbjct: 357 FGLRTASLACQRTTKAVVYILNTMGILVDVYI 388
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,163,778
Number of Sequences: 59808
Number of extensions: 396418
Number of successful extensions: 897
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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