Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d08f
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL117206-2|CAB60445.1|  303|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U00051-15|AAZ91344.1|  270|Caenorhabditis elegans Synaptotagmin ...    27   7.9  

>Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical
           protein F20D1.6 protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 24/90 (26%), Positives = 45/90 (50%)
 Frame = +1

Query: 235 NLVFYASLKQQPLEEGTSSNSVTKVHTLLNFDYRNPASINVQLNIPRKTRNNGTLYMHVV 414
           N++  AS+ +  L +    N+V K+ TL  F+Y+NP S N  L   +  + +   +   +
Sbjct: 414 NMLNAASMSENQLSDDELVNNV-KLDTL--FNYKNPKSANTFLAPYKCAKKSTVTWRLAI 470

Query: 415 MLDDSKLYKSFDEIRQTHPLHTWPLIKFVE 504
            L +++++ S D+ R    L    L+K  E
Sbjct: 471 ALANARVFMS-DQPRAEPQLWVEFLLKLRE 499


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 69  FSFRNEICISIFNSYI-NIRCVCNQYNMDIS*NIHTARMPPW 191
           F++ N +   + +S I N  C    Y   +S N+H+   PPW
Sbjct: 511 FNYSNFLLSKLLSSSIDNEECTFPSYMCKLSMNLHSDLYPPW 552


>AL117206-2|CAB60445.1|  303|Caenorhabditis elegans Hypothetical
           protein Y67A10A.4 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 149 HIVLITYTTNINVRIKDTDTNFIPKRELFLSVPDLRISDFQKILKFLHV 3
           HI L+T+T    ++IKD  T     R   ++ P+ ++  F K    L+V
Sbjct: 223 HIDLLTFTEEDAIKIKDILTESDTFRRGIINFPNTKMKKFAKPFDTLYV 271


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 136 INT-IWTLAEIFIPPECRRGDKCFSSYLTSN 225
           +NT I TL   F   EC RG KC    +T++
Sbjct: 232 LNTSITTLTRCFCDSECERGSKCCPGSITNS 262


>U00051-15|AAZ91344.1|  270|Caenorhabditis elegans Synaptotagmin
           protein 2 protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 178 ECRRGDKCFSS-YLTSNPVQNLVFYASLKQQPLEEGTSSNSVTKVH 312
           ECR GD CFS+ Y  +     L    +   + ++ G SS+   K++
Sbjct: 115 ECRLGDICFSTRYRPATGTVTLTIMEARNLKKMDVGGSSDPYVKIY 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,142
Number of Sequences: 27780
Number of extensions: 311577
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)