Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d06f
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.3  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 493 DQRKC**NEKYRARCTYCR 549
           +++ C  +++ R RC YCR
Sbjct: 124 EEKNCIIDKRQRNRCQYCR 142


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -1

Query: 214 PQRSKQTEWRKVQPWERELVICNGDGLRDNFFVP 113
           P +     W  V  W   L + N   + D FF P
Sbjct: 621 PHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFP 654


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 242 RCPQKWGSASTKEQTD 195
           +CP+K+G  +  EQ D
Sbjct: 38  QCPEKYGFFADAEQCD 53


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 232 KSGDQLPQRSKQTEWRKVQPWERE 161
           K+ ++LPQ+ K      +Q WE++
Sbjct: 226 KNENELPQQHKTNVMDVMQWWEQQ 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,848
Number of Sequences: 336
Number of extensions: 1925
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)