Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d06f
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    27   1.9  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.5  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   5.9  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   5.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   5.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   7.7  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   7.7  

>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 243 PMSTKVGISFHKGANR-LNGERFSHGN--VNWSSV 148
           PM+TK+G  ++KG      G++  HG   V WS V
Sbjct: 14  PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 134  QPVSITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 232
            +P +ITDD    P  N     L +PL W +I ++
Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +2

Query: 443 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 568
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 405 KNWLANTSWSSSLASCDPWTKIKS 334
           + W+ N+S S  L  CD   KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +2

Query: 443 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 568
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 419 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVET 553
           LP  S++   +  + + G   ++ PI+  V  T  +   +PI  T
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 266


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 555 PVSTIGTTRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAAL 433
           P  +  TT S+ +  +T   +  V TRY  + S+ VTS+++
Sbjct: 451 PTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSI 491


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -2

Query: 249 LGPMSTKVGISFHKGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAM 70
           L P S  V +  +  A + NG+R   G+V++ S  +   +IT +      +TVA   + +
Sbjct: 254 LKPGSVVVDVGIN--AVQRNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAMLMENI 311

Query: 69  KTAKR--RGENIFLDI 28
             A +  R ENI+  I
Sbjct: 312 VNAAKIARTENIYRKI 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,639
Number of Sequences: 5004
Number of extensions: 32763
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)