Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d06f
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   31   0.66 
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               29   2.0  
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)                  29   2.0  
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    29   3.5  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   4.6  
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)                   28   6.1  
SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)                    28   6.1  
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)             28   6.1  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 341 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 490
           I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG L + A
Sbjct: 64  IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 413 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 565
           YS+    S       + SD YL+ TA +SE +D +    R V I  TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219


>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
          Length = 371

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -2

Query: 252 ILGPMSTKVGISFHKGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKA 73
           I+GP+  K G  F     R  G  F     NW  V+ T    T +S A   + V +PA  
Sbjct: 217 IMGPLWFKHGDIFPVARLRFEGFMFDVPR-NWKQVLRTLYGRTGISAAVPTLMVVEPAPT 275

Query: 72  MK 67
            K
Sbjct: 276 QK 277


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 259 SVDSWPDVHKSGDQLPQRSKQTEWRKVQPWEREL--VICNGDGLRD 128
           +V S+  + KSG  +P R++ T +R   PW +E+  ++C  D L +
Sbjct: 135 AVSSYRFLCKSGHYIPLRTRSTLFR--NPWTKEIEFLVCTNDVLTE 178


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 353 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 442
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
          Length = 444

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 131 AQPVSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGP 247
           + P + T DQ +  + + SPFS  APL    P FVD  P
Sbjct: 219 SSPETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253


>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
          Length = 275

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 252 ILGPMSTKVGISFHKGANRLNGERFSH 172
           + G   T+VGI  H G NR+  + F H
Sbjct: 209 VAGEKKTEVGIKIHSGRNRIVRKIFEH 235


>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +2

Query: 377 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 556
           D DV+A Q    YS PV    +  +   +  G L  T   +   +KT+N +    I+E  
Sbjct: 61  DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120

Query: 557 APY 565
            PY
Sbjct: 121 KPY 123


>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
          Length = 617

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +2

Query: 377 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 556
           D DV+A Q    YS PV       +   +  G L  T       +KT+N + +  I+E  
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196

Query: 557 APY 565
            PY
Sbjct: 197 KPY 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,597
Number of Sequences: 59808
Number of extensions: 253388
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)