Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d04r
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...   127   2e-30
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   9.5  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score =  127 bits (306), Expect = 2e-30
 Identities = 83/235 (35%), Positives = 115/235 (48%), Gaps = 4/235 (1%)
 Frame = -1

Query: 795 AGATAIAEIXFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSAVGHGGLYHSQ 616
           AG   I E    ++   A D IVN AA+  Y SGG   +  +  R P          HSQ
Sbjct: 107 AGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGG-IQACPIVFRGPNGPAAAVAAQHSQ 165

Query: 615 SPEAFFAHXXXXXXXXXXXPIAAKGLLLACIRERDPCVFLEPKILYRSA---AEEVPVED 445
               ++                A+GLL A IR+ +P V LE +ILY      ++E   ED
Sbjct: 166 HFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSED 225

Query: 444 YTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARDKLGVSCDVIDLQSILPWDEETV 265
           + LP G A+  R G   T+VG    V   LE AD  +   GV  +VI+L+SI P D  T+
Sbjct: 226 FVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTI 285

Query: 264 CNSVKKTGRCLISHEAPLTSGFGAELAATVQE-ECFLHLEAPIARVTGWDAPFPH 103
             SVKKT R +   +A    G G+E+AA + E + F +L+AP+ RV+  D P P+
Sbjct: 286 AASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPY 340


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 342 MARDKLGVSCDVIDLQSILPWDEETVCNSVKKTG 241
           ++ D    S  V D++ ILP   +T  NSVK TG
Sbjct: 522 LSPDASSSSIPVTDIKEILPSQHDTPHNSVKLTG 555


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 501 TRRGPSRGCRPAADPWPLWAREAPPPGDRGHV--QRRPPDSGS 623
           +R  PS   RP + P  L   + PPP  R +V  Q  PP S S
Sbjct: 116 SRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYS 158


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 442 VILDGYFFGCRPVQYLRFQEHAGVP 516
           V+  G  + C   Q L F EH G+P
Sbjct: 208 VVGKGAAYACAEKQLLEFVEHTGIP 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,592
Number of Sequences: 5004
Number of extensions: 60058
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)