Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d04r
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27708| Best HMM Match : Transketolase_C (HMM E-Value=2.4e-14)      121   6e-28
SB_50675| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   2e-22
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                31   1.4  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     30   1.9  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              30   1.9  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   5.8  
SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_52335| Best HMM Match : FF (HMM E-Value=9.2)                        28   7.6  
SB_24167| Best HMM Match : FF (HMM E-Value=9.2)                        28   7.6  
SB_18429| Best HMM Match : FF (HMM E-Value=9.2)                        28   7.6  

>SB_27708| Best HMM Match : Transketolase_C (HMM E-Value=2.4e-14)
          Length = 226

 Score =  121 bits (292), Expect = 6e-28
 Identities = 50/75 (66%), Positives = 63/75 (84%)
 Frame = -1

Query: 258 SVKKTGRCLISHEAPLTSGFGAELAATVQEECFLHLEAPIARVTGWDAPFPHVFEPFYLP 79
           SV+KTGR LI+HEA  T GFG E+A+TVQ+ CFL LEAPI RV GWD PFPH+ EPFYLP
Sbjct: 152 SVEKTGRLLIAHEACHTGGFGGEIASTVQDRCFLSLEAPIQRVCGWDTPFPHILEPFYLP 211

Query: 78  DKWRCYQALIQLINY 34
           DKWRC++A+ ++I++
Sbjct: 212 DKWRCFEAVKKVISF 226



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = -1

Query: 795 AGATAIAEIXFADYIFPAFDQIVNEAAK 712
           AG+TAIAEI FADYIFPAFDQ V +  +
Sbjct: 131 AGSTAIAEIQFADYIFPAFDQSVEKTGR 158


>SB_50675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score =  103 bits (246), Expect = 2e-22
 Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
 Frame = -1

Query: 549 AKGLLLACIRERDPCVFLEPKILYRSAAE---EVPVEDYTLPLGKAQTLRVGAAATLVGW 379
           AKGLL + IRE +P V LE +++Y ++ E   E    D+ +P+GKA+  R G+  TLV  
Sbjct: 15  AKGLLKSAIREPNPVVVLENELMYGTSFEMSDEAMSADFLVPIGKAKIERPGSHITLVAH 74

Query: 378 GTQVHVLLEVADMARDKLGVSCDVIDLQSILPWDEETVCNSVKKTGRCLISHEAPLTSGF 199
              V   L+ A     + G+  +V++L+SI P D + + +SVKKT   +         G 
Sbjct: 75  SRPVETCLQAAKQLESE-GIDVEVLNLRSIRPMDTQAIVDSVKKTNHLVTVEGGWPHFGV 133

Query: 198 GAELAATVQE-ECFLHLEAPIARVTGWDAPFPH 103
           GAE+AATV E E F  L+API RVTG D P P+
Sbjct: 134 GAEIAATVMESEAFDFLDAPIIRVTGADIPMPY 166


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +3

Query: 507 RGPSRGCRPAADPWPLWAREAPPPGDRGHVQRRPPDSG 620
           RGP+ G  P   PW        PP DRG  Q RPP  G
Sbjct: 339 RGPAGGREPQDRPWSNDGPFGRPPDDRG-PQDRPPWDG 375


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/56 (37%), Positives = 22/56 (39%)
 Frame = +3

Query: 444 NPRRVLLRLPTGTVSSVPGTRRGPSRGCRPAADPWPLWAREAPPPGDRGHVQRRPP 611
           NP     R P     +  G    PSR   PA  P PL A   PPP  R  V   PP
Sbjct: 279 NPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPP-PLNATPPPPPPSRDQVPLPPP 333



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
 Frame = +3

Query: 381 SPPAWPRRRLLTSAPFPAVACNPRRVLLRLPTGTVSSVPGTRRGPSRGCRPAADPW---- 548
           +PP  P  R     P P      +R L   PTG+   +P    G +R   P   P     
Sbjct: 205 APP--PPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGE 262

Query: 549 PLWAREAPPPGDRGHVQRRPP 611
           P   + APPP  RG     PP
Sbjct: 263 PPPPKNAPPPPKRGSSNPPPP 283


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/56 (37%), Positives = 22/56 (39%)
 Frame = +3

Query: 444 NPRRVLLRLPTGTVSSVPGTRRGPSRGCRPAADPWPLWAREAPPPGDRGHVQRRPP 611
           NP     R P     +  G    PSR   PA  P PL A   PPP  R  V   PP
Sbjct: 191 NPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPP-PLNATPPPPPPSRDQVPLPPP 245



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
 Frame = +3

Query: 381 SPPAWPRRRLLTSAPFPAVACNPRRVLLRLPTGTVSSVPGTRRGPSRGCRPAADPW---- 548
           +PP  P  R     P P      +R L   PTG+   +P    G +R   P   P     
Sbjct: 117 APP--PPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGE 174

Query: 549 PLWAREAPPPGDRGHVQRRPP 611
           P   + APPP  RG     PP
Sbjct: 175 PPPPKNAPPPPKRGSSNPPPP 195


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/58 (37%), Positives = 27/58 (46%)
 Frame = +3

Query: 402 RRLLTSAPFPAVACNPRRVLLRLPTGTVSSVPGTRRGPSRGCRPAADPWPLWAREAPP 575
           R+  TSA  PA   NP       PT   SS P TR  PS G +P+A   P   ++  P
Sbjct: 701 RQKKTSAGKPAAGKNPIDSK-GSPTSEKSSRPATRGRPSTGRKPSAKSCPEQDKKQAP 757


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 513 PSRGCRPAADPWPLWAREAPPPGDRGHVQRRPPDSGS 623
           PSRG  P   P  +     PPP  R   +  PP  G+
Sbjct: 309 PSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGA 345


>SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 131 TRAIGASKCRKHSSCTVAASSAPNPDVSGASWDIKHRPVFFTELHTVSSSQGRIDCRSMT 310
           T A+G S+ R +S  TVA +++ +    G S   +H     T  HTV+    R      T
Sbjct: 124 TVALGISRIRHYSRHTVALATSRHTVALGTS---RHTVALATSRHTVALGTSRHTVALAT 180

Query: 311 SQLTPSL 331
           S+ T +L
Sbjct: 181 SRHTVAL 187


>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
 Frame = +3

Query: 384 PPAWPRRRLLTSAPFPAVACNPRRVLLRLPTGTVSSVPGTRR--GPSRGCRPAADPWPLW 557
           P   P R    S P P  A  PR  L   P G     P TR    P    +PA    P  
Sbjct: 220 PRPAPARDRAASGPGPKPAVKPRDRLATAPPGR-PPAPHTREKIAPVPSSKPAGTKEPAK 278

Query: 558 AREAPPPGDRGHVQRRPPDSGSG 626
             E+          R PP  G G
Sbjct: 279 DEESQQSKPPAAAARGPPKFGIG 301


>SB_52335| Best HMM Match : FF (HMM E-Value=9.2)
          Length = 236

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 637 RRTLPLPESGGLLCTCPRSPG-GGASRAHSGQGSAAGLHPREGPLRVPGTEDTVPV--GS 467
           R  L + E+ G   +C R+     A R+    G  AG+HPR   +  PG  D VP    S
Sbjct: 142 RYQLAVQEAKGETESCGRTRSVADAERSGDKHGRWAGVHPRVQHVTDPGI-DRVPSRRRS 200

Query: 466 RRSTRRGLHATAGKGA 419
           + S    +HA  G  A
Sbjct: 201 KASAPAKVHAEGGAPA 216


>SB_24167| Best HMM Match : FF (HMM E-Value=9.2)
          Length = 482

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 637 RRTLPLPESGGLLCTCPRSPG-GGASRAHSGQGSAAGLHPREGPLRVPGTEDTVPV--GS 467
           R  L + E+ G   +C R+     A R+    G  AG+HPR   +  PG  D VP    S
Sbjct: 388 RYQLAVQEAKGETESCGRTRSVADAERSGDKHGRWAGVHPRVQHVTDPGI-DRVPSRRRS 446

Query: 466 RRSTRRGLHATAGKGA 419
           + S    +HA  G  A
Sbjct: 447 KASAPAKVHAEGGAPA 462


>SB_18429| Best HMM Match : FF (HMM E-Value=9.2)
          Length = 456

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 637 RRTLPLPESGGLLCTCPRSPG-GGASRAHSGQGSAAGLHPREGPLRVPGTEDTVPV--GS 467
           R  L + E+ G   +C R+     A R+    G  AG+HPR   +  PG  D VP    S
Sbjct: 362 RYQLAVQEAKGETESCGRTRSVADAERSGDKHGRWAGVHPRVQHVTDPGI-DRVPSRRRS 420

Query: 466 RRSTRRGLHATAGKGA 419
           + S    +HA  G  A
Sbjct: 421 KASAPAKVHAEGGAPA 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,598,954
Number of Sequences: 59808
Number of extensions: 547769
Number of successful extensions: 3624
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3617
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)