Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d04f
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su... 64 2e-11
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 4.0
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 4.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 4.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 4.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 4.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 4.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 4.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 4.0
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 9.2
>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 366
Score = 64.1 bits (149), Expect = 2e-11
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 KMNMMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQX 367
+M + A+N+AM+ +K + L GE+VA + G ++ + GL +K+G RV +TP+ E
Sbjct: 37 EMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMG 96
Query: 368 XXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSA 547
E ++ A D IVN AA+ Y SGG + + R P
Sbjct: 97 FTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGG-IQACPIVFRGPNGP 155
Query: 548 VGHGGLYHSQ 577
HSQ
Sbjct: 156 AAAVAAQHSQ 165
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 357 HSGVLKTRSLPYFSCNPKAHLKTPPNATSSPNNT 256
+S VL ++PY SC P TP +A+S + T
Sbjct: 147 NSTVLTFTAVPYDSCLPAPDRHTPSSASSRASET 180
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 339 TRSLPYFSCNPKAHLKTPPNATSSPNNTA 253
T SLP + N PN S+PNNTA
Sbjct: 123 TPSLPQSATNISFDSSAIPNVQSNPNNTA 151
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 77 LYLNLSFLTSRNPTTVELGNKLLST 3
LYLN+ ++++ NP+T+ G L+T
Sbjct: 1289 LYLNVKYISNLNPSTIMSGWTTLAT 1313
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 327 PYFSCNPKAHLKTPPNATSSPNN 259
P SC PK LK PP SS N
Sbjct: 192 PPISCLPKDLLKAPPADPSSKEN 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,046
Number of Sequences: 5004
Number of extensions: 50576
Number of successful extensions: 141
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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