Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d04f
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 160 7e-40
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 81 1e-15
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 80 2e-15
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 66 3e-11
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 66 3e-11
11_03_0179 + 11290595-11290814,11290886-11291382 31 0.58
10_01_0015 - 187905-188432 31 1.0
02_01_0302 - 2021221-2023305 29 2.4
05_05_0100 + 22388457-22388561,22388657-22388808,22388897-223892... 29 3.1
05_05_0099 - 22381586-22382604,22382683-22383056,22383145-223832... 29 3.1
01_06_0268 - 28026512-28026682,28026782-28026919,28027151-280273... 29 4.1
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 27 9.5
06_01_0666 - 4873797-4874057,4874327-4874455 27 9.5
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 160 bits (389), Expect = 7e-40
Identities = 83/162 (51%), Positives = 99/162 (61%), Gaps = 21/162 (12%)
Frame = +2
Query: 179 GETTKMNMMQAINNAMDITLKNNPTAVLFGEDVAFGGVFRCALGLQEKYGKDRVFNTPLC 358
G ++N+ AIN A+ I L +P + +FGEDV FGGVFRC GL +++G++RVFNTPLC
Sbjct: 45 GAGKEVNLFTAINQALHIALDTDPRSYVFGEDVGFGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 359 EQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFD---------------------QIVNEA 475
EQ EIQFADYIFPAFD QIVNEA
Sbjct: 105 EQGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQACLRLDQCFVPTYLYIQLLVQIVNEA 164
Query: 476 AKARYRSGGEYDSGALTVRAPCSAVGHGGLYHSQSPEAFFAH 601
AK RYRSG E++ G LT+R+P AVGHGG YHSQSPEAFF H
Sbjct: 165 AKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAFFCH 206
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 80.6 bits (190), Expect = 1e-15
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Frame = +2
Query: 158 DKERPVDGETTKMNMMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKD 334
D R +M + +A+N+A+D + +P+ L GE+V + G ++ + GL +KYG +
Sbjct: 31 DAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPE 90
Query: 335 RVFNTPLCEQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDS 514
RV +TP+ E E ++ A D I+N AAK+ Y S G+ S
Sbjct: 91 RVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQI-S 149
Query: 515 GALTVRAPCSAVGHGGLYHSQSPEAFFAH 601
+ R P A G HSQ A++AH
Sbjct: 150 VPIVFRGPNGAAAGVGAQHSQCYAAWYAH 178
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 79.8 bits (188), Expect = 2e-15
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Frame = +2
Query: 167 RPVDGETTKMNMMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVF 343
R +M + +A+N+A+D + +P+ L GE+V + G ++ + GL +KYG DRV
Sbjct: 14 RTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVL 73
Query: 344 NTPLCEQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGAL 523
+TP+ E E ++ A D I+N AAK+ Y S G+ + +
Sbjct: 74 DTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINV-PI 132
Query: 524 TVRAPCSAVGHGGLYHSQSPEAFFAH 601
R P A G HSQ A++AH
Sbjct: 133 VFRGPNGAAAGVGAQHSQCYAAWYAH 158
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 65.7 bits (153), Expect = 3e-11
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Frame = +2
Query: 200 MMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQXXXX 376
+ +A+ A+ +K +PT +FGEDV +GG ++ GL E +G RV +TP+ E
Sbjct: 58 LFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFAG 117
Query: 377 XXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSAVGH 556
E ++ A++QI N Y SGG++ + +R P
Sbjct: 118 MGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKI-PIVIRGPGGVGRQ 176
Query: 557 GGLYHSQSPEAFF 595
G HSQ E++F
Sbjct: 177 LGAEHSQRLESYF 189
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 65.7 bits (153), Expect = 3e-11
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Frame = +2
Query: 200 MMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQXXXX 376
+ +A+ A+ +K +PT +FGEDV +GG ++ GL E +G RV +TP+ E
Sbjct: 75 LFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTG 134
Query: 377 XXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSAVGH 556
E ++ A++QI N Y SGG++ + +R P
Sbjct: 135 MGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKI-PIVIRGPGGVGRQ 193
Query: 557 GGLYHSQSPEAFF 595
G HSQ E++F
Sbjct: 194 LGAEHSQRLESYF 206
>11_03_0179 + 11290595-11290814,11290886-11291382
Length = 238
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 23 PIQQSLDFVTLKMTSLSTKSIVFHKLIRNVNNYAKRMSSHFIYYPD 160
P+QQS+D K+T +T S+ KL + N A R S + +Y D
Sbjct: 155 PLQQSMDAFMEKVTETTTGSVTL-KLYKGSVNIASRKSPYILYGED 199
>10_01_0015 - 187905-188432
Length = 175
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 469 RSCQSEVQIWRGVRQRRPHGPRALQCGRARR 561
R+ + + WRG R+RR G R +C R RR
Sbjct: 85 RTASTRSERWRGGRRRRSEGRRGGRCRRGRR 115
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 632 REAPPPGDRGHVQRRPPDSGS 570
R APPPG G + PP SGS
Sbjct: 564 RFAPPPGSYGPIPSTPPSSGS 584
>05_05_0100 +
22388457-22388561,22388657-22388808,22388897-22389270,
22389349-22390367
Length = 549
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 333 SLPYFSCNPKAHLKTPPNATSSPNNTAV 250
+ PY+ NP + TPPN T+ N T V
Sbjct: 424 NFPYYPLNPFNYTGTPPNNTNVMNGTKV 451
>05_05_0099 -
22381586-22382604,22382683-22383056,22383145-22383296,
22383392-22383496
Length = 549
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 333 SLPYFSCNPKAHLKTPPNATSSPNNTAV 250
+ PY+ NP + TPPN T+ N T V
Sbjct: 424 NFPYYPLNPFNYTGTPPNNTNVMNGTKV 451
>01_06_0268 -
28026512-28026682,28026782-28026919,28027151-28027366,
28027488-28027564,28027845-28028448
Length = 401
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = -3
Query: 559 AVPDRTAGRADREGAAVVLPSRSVPRFGSF------VHYLIKCWKYVISKLYFSNSSCAC 398
A+P AGR REG LP R G+ + YL+ W V+ + F+ ++ +
Sbjct: 101 ALPSSAAGRRRREGPLHALPPRPPLAAGALALAAWALSYLVLAWHTVVDVVCFTLTAASL 160
Query: 397 SG 392
G
Sbjct: 161 MG 162
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 502 GVRQRRPHGPRALQCGRARRTLPLPESGGLL---CTCPRSPGGGA 627
G R+ R G + G RR P PE GG + C P GGG+
Sbjct: 88 GAREGRGGGGGSQIWGTERRRWPEPEEGGAVRRRCLEPGEGGGGS 132
>06_01_0666 - 4873797-4874057,4874327-4874455
Length = 129
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 440 IFPAFDQIVNEAAKARYRSGGE--YDSGALTVRAPC 541
+ P F +++ + K R RS GE Y G LT+ PC
Sbjct: 73 VMPVFRRLLEKGRK-RSRSSGEFEYSDGELTMSIPC 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,590
Number of Sequences: 37544
Number of extensions: 357636
Number of successful extensions: 1150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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