Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d04f
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27708| Best HMM Match : Transketolase_C (HMM E-Value=2.4e-14)       65   5e-11
SB_54534| Best HMM Match : IRF (HMM E-Value=0.0051)                    28   7.4  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)                28   7.4  
SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)                     27   9.7  

>SB_27708| Best HMM Match : Transketolase_C (HMM E-Value=2.4e-14)
          Length = 226

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 42/104 (40%), Positives = 47/104 (45%)
 Frame = +2

Query: 170 PVDGETTKMNMMQAINNAMDITLKNNPTAVLFGEDVAFGGVFRCALGLQEKYGKDRVFNT 349
           P   ET KMN  QA+ +AMDI L  +PT                        GKDRVFNT
Sbjct: 78  PEPRETKKMNFFQALTDAMDIALDTDPTT-----------------------GKDRVFNT 114

Query: 350 PLCEQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAK 481
           PL EQ                  EIQFADYIFPAFDQ V +  +
Sbjct: 115 PLSEQGIVGFGIGVAAAGSTAIAEIQFADYIFPAFDQSVEKTGR 158


>SB_54534| Best HMM Match : IRF (HMM E-Value=0.0051)
          Length = 217

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +1

Query: 493 IWRGVRQRR----PHGPRALQCGRARRTLPLPES 582
           IWRG+ + R    PH P    C  ARR  PL ++
Sbjct: 127 IWRGLMRVRIPAPPHSPAFALCDSARRLYPLTKT 160


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 338  HGPCHISPVTPKHI*RHPRMRHLHRTIQQL 249
            +GPCH+ P  P    +  + R LHR  Q++
Sbjct: 2522 NGPCHVMPPKPPTKEQLEKSRRLHRMKQEM 2551


>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
          Length = 746

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +1

Query: 493 IWRGVRQRR----PHGPRALQCGRARRTLPLPES 582
           IWRG+ + R    PH P    C  ARR  PL ++
Sbjct: 388 IWRGLMRVRIPAPPHSPAFALCDSARRLYPLTKT 421


>SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 287 GVFRCALGLQEKYGK 331
           GV RC L  QEKYGK
Sbjct: 326 GVLRCLLDTQEKYGK 340


>SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)
          Length = 403

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 252 LLYCSVKMSHSGVSSDVLWGYRRNMARTVFSILHYVNRVLP 374
           L +C++K S++    DVL+ Y  N   TVF +   V +V P
Sbjct: 43  LSFCTLKNSYNN-RIDVLFQYTNNNETTVFQVQAQVRQVGP 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,176,186
Number of Sequences: 59808
Number of extensions: 406003
Number of successful extensions: 1054
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)